Work from several laboratories has indicated that many different proteins are subject to endoplasmic reticulum (ER) degradation by a common ER-associated machinery. This machinery includes ER membrane proteins Hrd1p/Der3p and Hrd3p and the ER-associated ubiquitinconjugating enzymes Ubc7p and Ubc6p. The wide variety of substrates for this degradation pathway has led to the reasonable hypothesis that the HRD (Hmg CoA reductase degradation) gene-encoded proteins are generally involved in ER protein degradation in eukaryotes. We have tested this model by directly comparing the HRD dependency of the ER-associated degradation for various ER membrane proteins. Our data indicated that the role of HRD genes in protein degradation, even in this highly defined subset of proteins, can vary from absolute dependence to complete independence. Thus, ER-associated degradation can occur by mechanisms that do not involve Hrd1p or Hrd3p, despite their apparently broad envelope of substrates. These data favor models in which the HRD gene-encoded proteins function as specificity factors, such as ubiquitin ligases, rather than as factors involved in common aspects of ER degradation.
INTRODUCTIONThe endoplasmic reticulum (ER) is an important site of cellular protein degradation in eukaryotes. Both lumenal and integral ER membrane proteins undergo selective degradation for purposes of quality control or feedback regulation (Chun et al., 1990;Klausner and Sitia, 1990). Accordingly, the ER degradation pathway plays an important role in normal and pathological processes, including cholesterol synthesis (Edwards et al., 1983;Nakanishi et al., 1988;Hampton and Rine, 1994), HIV biogenesis (Bour et al., 1995), cystic fibrosis (Jensen et al., 1995;Ward et al., 1995), lipoprotein metabolism (Fisher et al., 1997), and protein quality control (Hiller et al., 1996;Kopito, 1997).ER protein degradation is conserved between yeast and mammals, allowing genetic analysis of this process. In separate studies, yeast mutants deficient in degradation of the normal, ER-resident protein Hmg2p, an isozyme of HMGCoA reductase (HMGR) (Hampton and Rine 1996b), and mutants deficient in ER degradation of CPY*, a misfolded protein that is retained in the lumen of the ER (Knop et al., 1996;Bordallo et al., 1998), have been isolated. The genes from these studies are referred to as HRD (Hmg CoA reductase degradation) and DER (degradation in the endoplasmic reticulum) genes, respectively. For either substrate, ubiquitination is required for subsequent degradation by the proteasome. Ubiquitination is effected by the ER-associated ubiquitin-conjugating enzymes, of which Ubc7p appears to play a major role (Hiller et al., 1996;Hochstrasser, 1996;Hampton and Bhakta, 1997). Furthermore, integral ER membrane proteins Hrd1p/Der3p and Hrd3p are also required for degradation of both of these substrates (Hampton et al., 1996a;Bordallo et al., 1998;Plemper et al., 1999).These and subsequent studies on the HRD/DER genes have indicated a broad role for these genes in the ERassociated ...