The degQ gene of Bacillus subtilis (natto), encoding a small peptide of 46 amino acids, is essential for the synthesis of extracellular poly-gamma-glutamate (␥PGA). To elucidate the role of DegQ in ␥PGA synthesis, we knocked out the degQ gene in Bacillus subtilis (natto) and screened for suppressor mutations that restored ␥PGA synthesis in the absence of DegQ. Suppressor mutations were found in degS, the receptor kinase gene of the DegS-DegU two-component system. Recombinant DegS-His 6 mutant proteins were expressed in Escherichia coli cells and subjected to an in vitro phosphorylation assay. Compared with the wild type, mutant DegS-His 6 proteins showed higher levels of autophosphorylation (R208Q, M195I, L248F, and D250N), reduced autodephosphorylation (D250N), reduced phosphatase activity toward DegU, or a reduced ability to stimulate the autodephosphorylation activity of DegU (R208Q, D249G, M195I, L248F, and D250N) and stabilized DegU in the phosphorylated form. These mutant DegS proteins mimic the effect of DegQ on wild-type DegSU in vitro. Interestingly, DegQ stabilizes phosphorylated DegS only in the presence of DegU, indicating a complex interaction of these three proteins.Extracellular poly-gamma-glutamate (␥PGA) is a glutamate polymer linked through a gamma-peptide bond produced outside the cells by bacilli, including Bacillus subtilis, B. licheniformis, and B. anthracis, and Staphylococcus epidermidis (4). It acts as a nutrient reservoir to prevent starvation in the stationary phase and as a barrier against bacteriophage or phagocytotic attack by the host immune system (4, 12, 14, 16). Microbial functions that are not essential for the life cycle under laboratory conditions but that are required for survival in the natural environment are sometimes lost in domesticated laboratory strains. The loss of the ability to synthesize ␥PGA in a laboratory strain of B. subtilis is an example of such an event, and a mutation in degQ is involved in it (30).degQ function was characterized mainly through studies of the ␥PGA-negative laboratory lineage B. subtilis 168. degQ encodes a small peptide of 46 amino acids, and it is a pleiotropic regulator of degradation enzymes, including alkaline protease, ␣-amylase, and levansucrase (1). The expression of degQ is dependent on comA, the global transcriptional regulator in the stationary phase, and is strongly induced under dense-cell conditions (18). The regulation of these exoenzymes by degQ requires the presence of the degS-degU operon that comprises a two-component system (17, 18). The sensor histidine kinase DegS has four activities: it acts as a self-kinase (autophosphorylation of His189), a self-phosphatase (autodephosphorylation), a phosphotransferase (phosphorylation of Asp56 of DegU), and a phosphatase (dephosphorylation of DegU) (5,6,15,20,31). Exoenzyme expression is controlled directly by DegU, a DNA-binding protein, and DegU phosphorylation by DegS (DegU-P i ) enhances it (25,29,34). A recent study reported that DegQ stimulates phosphate transfer from phospho...