Collagen IV is a major protein component of basement membranes, a specialized form of extracellular matrix underlying epithelia that compartmentalizes tissues and provides molecular signals for influencing cell behavior. The collagen IV family is composed of six ␣-chains (␣1 to ␣6) that assemble into three kinds of triple-helical protomers (1). Each protomer has three functional domains, a 7S domain at the N terminus, a long triple-helical collagenous domain in the middle of the molecule, and a noncollagenous (NC1) 1 domain trimer at the C terminus. Protomers self-assemble into networks by end-to-end associations that connect four molecules at the N terminus, forming a 7S tetramer, and two molecules at the C terminus, forming a NC1 domain hexamer (1). Three types of networks are known: an ␣1.␣2 network present in the basement membranes of all metazoa and an ␣3.␣4.␣5 network and an ␣1.␣2-␣5.␣6 network that have restricted distributions. The networks are essential for tissue function, because they provide mechanical stability, provide a scaffold for assembly of other macromolecules, and serve as ligands for integrins (1-3).The NC1 domain plays a pivotal role in the assembly of distinct networks. The specificity for chain selection is governed by recognition sequences encoded within NC1 domains of the respective six ␣-chains (4, 5). In protomer assembly, the NC1 domains (monomers) of three chains interact, forming an NC1 trimer, to select and register chains for triple-helix formation. In network assembly, the NC1 trimers of two protomers interact, forming an NC1 hexamer structure, to select and connect protomers. This trimer-trimer interface is stabilized by a putative covalent cross-link, which may exist in all three collagen IV networks (6).The existence of cross-links (reducible and nonreducible) was first proposed from studies of the NC1 hexamer isolated by collagenase digestion of ␣1.␣2 collagen IV networks of human placenta, aorta, and mouse tumor (7,8). Upon exposure to acidic pH or denaturants, the NC1 hexamer dissociates into monomers and dimers, the later reflecting the cross-links. Subsequent studies of ␣1.␣2, ␣3.␣4.␣5, and ␣1.␣2-␣5.␣6 collagen IV networks have shown that the cross-links connect ␣1-like monomers (␣1-␣1, ␣1-␣5, and ␣3-␣5) and ␣2-like monomers (␣2-␣2, ␣2-␣6, and ␣4-␣4) (9, 10). For two decades, the reducible dimers were thought to be disulfide-linked monomers (7, 11). However, the recent x-ray crystal structures of the NC1 hexamers of bovine lens capsule basement membrane (LBM) and human placenta basement membrane (hPBM), determined * This work was supported in part by Grants DK18381 (to B. G. H.), DK065123 (to B. G. H.), DK62524 (to M. S.), and RR017806 (to D. B. F) from the National Institutes of Health. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.The atomic coordinates and structure factors (codes 1T60 and...