Glycine betaine (N,N,N-trimethylglycine) is an important osmoprotectant and is synthesized in response to abiotic stresses. Although almost all known biosynthetic pathways of betaine are two-step oxidation of choline, here we isolated two N-methyltransferase genes from a halotolerant cyanobacterium Aphanothece halophytica. The most known biosynthetic pathways of betaine are the two-step oxidation of choline. Many bacteria, plants, and animals accumulate glycine betaine (here after betaine) under abiotic stress conditions (1-3). In these organisms, it was shown that betaine is synthesized by two steps, choline 3 betaine aldehyde 3 glycine betaine. The enzyme involved in the second step seems to be the same in plants, animals, and bacteria, namely NAD ϩ -dependent betaine-aldehyde dehydrogenase (4 -6). By contrast, different enzymes are involved for the first step. In plants, it was catalyzed by a novel Rieske-type iron-sulfur enzyme choline monooxygenase (7,8). In animals and many bacteria, the first step is catalyzed by membranebound choline dehydrogenase or soluble choline oxidase (9 -11). In some bacteria, choline dehydrogenase and choline oxidase also catalyze the second oxidation step (9 -11).It was suggested that betaine might be synthesized from glycine by a series of methylation reactions in archaebacterium Methanohalophilus portucalensis (12) and anaerobic phototrophic sulfur bacterium Ectothiorhodospira halochloris (13). Betaine synthesis from simple carbon sources has also been suggested in aerobic heterotrophic eubacterium Actinopolyspora halophila (13) and halotolerant cyanobacterium of Aphanothece halophytica (14). Recently, the methyltransferase genes that are involved in betaine synthesis have been isolated from E. halochloris and A. halophila (15). Two methyltransferase genes were involved in E. halochloris. One of gene products catalyzed the methylation reactions of glycine and sarcosine to sarcosine and dimethylglycine, respectively (EcGSMT), 1 whereas the other one catalyzed the methylations of sarcosine and dimethylglycine to dimethylglycine and betaine, respectively (EcSDMT) (15,16). By contrast, one ORF was found in A. halophila of which the N-and C-terminal parts had homologous sequences to those of EcGSMT and EcSDMT, respectively (15). The functionality of A. halophila methyltransferase was not well shown due to the formation of cell pellet when expressed in Escherichia coli.Glycine N-methyltransferase (GMT) catalyzing the methylation of glycine to sarcosine is known in mammalian cells although the enzymes catalyzing the further methylation steps do not occur (17,18). The homology of amino acid sequences between mammalian GMT and EcGSMT was low. No homologous sequences to those of EcGSMT, EcSDMT, and A. halophila methyltransferase could be found. Therefore, it was interesting to examine whether betaine is synthesized from glycine by three-step methylation reactions in other organisms.