Perennial grasses can sequester soil organic carbon (SOC) in sustainably managed biofuel systems, directly mitigating atmospheric CO 2 concentrations while simultaneously generating biomass for renewable energy. The objective of this study was to quantify SOC accumulation and identify the primary drivers of belowground C dynamics in a zero-tillage production system of tropical perennial C4 grasses grown for biofuel feedstock in Hawaii. Specifically, the quantity, quality, and fate of soil C inputs were determined for eight grass accessions -four varieties each of napiergrass and Guinea grass. Carbon fluxes (soil CO 2 efflux, aboveground net primary productivity, litterfall, total belowground carbon flux, root decay constant), C pools (SOC pool and root biomass), and C quality (root chemistry, C and nitrogen concentrations, and ratios) were measured through three harvest cycles following conversion of a fallow field to cultivated perennial grasses. A wide range of SOC accumulation occurred, with both significant species and accession effects. Aboveground biomass yield was greater and root lignin concentration was lower for napiergrass than Guinea grass. Structural equation modeling revealed that root lignin concentration was the most important driver of SOC pool: varieties with low root lignin concentration, which was significantly related to rapid root decomposition, accumulated the greatest amount of SOC. Roots with low lignin concentration decomposed rapidly, but the residue and associated microbial biomass/byproducts accumulated as SOC. In general, napiergrass was better suited for promoting soil C sequestration in this system. Further, high yielding varieties with low root lignin concentration provided the greatest climate change mitigation potential in a ratoon system. Understanding the factors affecting SOC accumulation and the net greenhouse gas tradeoffs within a biofuel production system will aid in crop selection to meet multiple goals towards environmental and economic sustainability.