Water oxidation in photosynthetic organisms occurs through the five intermediate steps S 0 -S 4 of the Kok cycle in the oxygen evolving complex of photosystem II (PSII). Along the catalytic cycle, four electrons are subsequently removed from the Mn 4 CaO 5 core by the nearby tyrosine Tyr-Z, which is in turn oxidized by the chlorophyll special pair P680, the photo-induced primary donor in PSII. Recently, two Mn 4 CaO 5 conformations, consistent with the S 2 state (namely, S A 2 and S B 2 models) were suggested to exist, perhaps playing a different role within the S 2 -to-S 3 transition. Here we report multiscale ab initio density functional theory plus U simulations revealing that upon such oxidation the relative thermodynamic stability of the two previously proposed geometries is reversed, the S B 2 state becoming the leading conformation. In this latter state a proton coupled electron transfer is spontaneously observed at ∼100 fs at room temperature dynamics. Upon oxidation, the Mn cluster, which is tightly electronically coupled along dynamics to the Tyr-Z tyrosyl group, releases a proton from the nearby W1 water molecule to the close Asp-61 on the femtosecond timescale, thus undergoing a conformational transition increasing the available space for the subsequent coordination of an additional water molecule. The results can help to rationalize previous spectroscopic experiments and confirm, for the first time to our knowledge, that the water-splitting reaction has to proceed through the S B 2 conformation, providing the basis for a structural model of the S 3 state.QM/MM | photosynthesis | molecular dynamics | reaction mechanisms F or 2.5 Gy photosynthetic organisms have used the photosystem II complex (PSII) to capture light energy from the sun and convert it into chemical energy stored within energy-rich carbohydrates (1). The water oxidation reaction, occurring in the reaction center of PSII, represents the central step of the natural photosynthetic process, leading to the formation of molecular oxygen and hydrogen equivalents. A deep understanding of the photosynthetic water-splitting mechanism may serve as a valuable source of inspiration for the development of artificial devices able to store solar energy in environmentally friendly fuels, such as molecular hydrogen (2-6). The active site of the PSII enzyme, where the water-splitting reaction takes place, consists of a core of four Mn ions and one Ca ion connected together through μ-oxo bridges in a cubane-like aggregate (7). Water oxidation proceeds through five sequential S 0 ÀS 4 steps known as the Kok cycle (8). At each step of the catalytic cycle the absorption of photons turns out the oxidation of the tyrosyl group of a nearby tyrosine (i.e., Tyr161, also known as Tyr-Z in the D1 subunit of PSII), which acts as an intermediate in the electron transfer between the Mn 4 CaO 5 cluster and the primary donor P680 (9, 10).The molecular structure for the different states of the Kok cycle was largely investigated in the past decades by extended X-ray absor...