Q fever is an emerging health problem in both humans and animals. To estimate the prevalence of Coxiella burnetii (C. burnetii) antibodies in the Estonian population, we analyzed plasma samples from 1000 individuals representing the general population and 556 individual serum samples from five population groups potentially at a higher risk (veterinary professionals, dairy cattle, beef cattle, and small ruminant stockbreeders and hunters). Additionally, 118 dairy cow bulk tank milk samples were analyzed to establish the infection status of the dairy cattle herds and the participating dairy cattle keepers. Questionnaires were used to find the potential risk factors of exposure. The effects of different variables were evaluated using binary logistic regression analysis and mixed-effects logistic analysis. The prevalence in veterinary professionals (9.62%; p = 0.003) and dairy cattle farmers (7.73%; p = 0.047) was significantly higher than in the general population (3.9%). Contact with production animals in veterinary practice and being a dairy stockbreeder in C. burnetii positive farms were risk factors for testing C. burnetii seropositive (p = 0.038 and p = 0.019, respectively). Results suggest that C. burnetii is present in Estonia and the increased risk of infection in humans is associated with farm animal contact.Microorganisms 2019, 7, 629 2 of 12 estimates should be compared with caution as different approaches to determine seropositivity for Coxiella burnetii infection have been used in these studies. In most studies, indirect immunofluorescent assay (IFA) [2,3,7,11] or enzyme-linked immunosorbent assay (ELISA) [4,13] has been used, and less frequently the complement fixation test (CFT) [13]. The IFA has been shown to be the most sensitive and specific test for C. burnetii antibody detection, but since IFA testing is more laborious, combining ELISA as a primary screening test and IFA as a confirmatory test has been suggested for large-scale population studies [14].Domestic ruminants are considered one of the main infection sources for humans [13,[15][16][17][18][19][20]. The infection transmits to humans mainly through the inhalation of aerosols containing C. burnetii [13,15,19,21] or via direct contact with infected animals [22,23]. In lactating animals, the bacterium is excreted in the milk [24][25][26], and consuming unpasteurized goat's milk, cow's milk, or raw milk products is a risk factor for acquiring the infection [18,23,27]. Coxiella burnetii produces small spore-like forms [28] that enable the pathogen to survive in the environment for long periods of time [29,30]. Some environmental and meteorological conditions increase the risk of infection, such as higher wind speeds, soil, and landscapes being more sensitive to wind erosion and low rainfall [15,21,31]. A number of animal species, including pets [32][33][34][35], horses [36,37], birds [38], wildlife, and arthropods (mainly ticks) [39][40][41][42], might also play a role in spreading C. burnetii.The main risk factors for human infection are dire...