In few-mode erbium-doped fiber, which is key sections in space division multiplexing (SDM) communication system, linearly polarized (LP) and orbital angular momentum (OAM) mode as two groups of mode-bases with different phase profile can be transformed into each other for the fiber’s weakly guiding condition. In principle, the LPand OAM modes have different mode spatial intensity distribution and a gain difference for FM -EDF amplifier. How to analyze and characterize the differential mode-bases gain (DMBG) is important but still an issue. Here, we build for the first time a local analysis model composed of discrete elements of the FM-EDF cross-section in mode spatial intensity distribution azimuthal variations areas. Using the model during the two mode-bases, the description of local gain difference details and the analysis of local particle number distribution is realized, and the overall gain difference is obtained. By building the amplifier system based on mode phase profile controlling, the gain of two mode-bases is characterized experimentally. The measured DMBG is about 0.8dB in the second-order mode, which is consistent with the simulation result. This DMBG can be used to improve the performance of SDM communication system by switching the mode-bases with controlling the mode phase profile.