The accuracy of Young's modulus of bone estimated from computed tomography (CT) values has not been evaluated by means of nano-indentation (NI) measurements. This study tested the validity of an equation for obtaining Young's modulus from CT-derived bone mineral density (BMD). Maxillary bones of 17-week-old male C57BL/6J mice (n=9) were scanned by micro-CT (µCT) after sacrifice, and subsequently subjected to NI (n=5) in wet conditions at two regions of interest (ROI). These ROIs were placed in the cortical bone of the hard palate on a section parallel to the frontal plane near the incisor teeth; one at the top of the palate close to the median (ROI-1), and the other approximately 500 µm outside of ROI-1 (ROI-2). The modulus of each indent was calculated using the method of Oliver and Pharr, while BMD was estimated from the CT number of each corresponding voxel. The average Young's modulus for ROI-1 (19.38±3.49 GPa) was statistically significantly lower than that for ROI-2 (28.91±5.06 GPa) (p<0.05), while BMD did not differ significantly between ROI-1 (1.27±0.13 g/cm 3 ) and ROI-2 (1.38±0.13 g/cm 3 ). The Young's modulus (E)-BMD (ρ) relationship was obtained as a power regression model for ROI-1 (E=16.748ρ 0.662 , R 2= 0.256, p=0.163) and ROI-2 (E=17.486ρ1.596 , R 2= 0.661, p=0.013). The relatively weak correlation for ROI-1 was presumably in association with the limitation of current µCT resolution, which could not capture non-homogeneous microstructures. The results suggest that the potential for estimating Young's modulus in local bone structures is limited when based solely on the CT numbers.