First Report of Grapevine Red Globe Virus in Grapevines in Washington State

Abstract

Grapevine red globe virus (GRGV; genus Maculavirus, family Tymoviridae) has been reported in grapevines (Vitis spp.) from Italy, Greece, France, China, Spain and Germany and in California, U.S.A. (Sabanadzovic et al. 2000; Cretazzo et al. 2017; Fan et al. 2016; Ruiz-Garcia et al., 2018). During surveys of grapevine nurseries, a total of 241 composite samples, each consisting of four petioles from mature leaves/vine from five asymptomatic grapevines, from 33 grapevine (Vitis vinifera) cultivars were collected. Total RNA isolated from these samples using Spectrum Total RNA isolation kit (Sigma-Aldrich, St. Louis, MO) was subjected to high-throughput sequencing (HTS) on an Illumina HiSeq2500 or Novaseq 6000 platforms in paired-end mode (Genomics Core Facility, Huntsman Cancer Institute, Utah University, Salt Lake City, UT). After trimming raw reads based on quality and ambiguity, the paired-end quality reads of approximately 120 (HiSeq) or 145 (Novaseq) base pair (bp) length were assembled de novo into a pool of contigs (CLC Genomics workbench 12). These contigs were subjected to BLASTn analysis against the nonredundant virus database from GenBank (http://www.ncbi.nlm.nih.gov/blast). A total of 49 contig sequences, ranging from 200 to 1645 bp in length with an average coverage ranging up to 418.7, aligning with GRGV genome were detected in cvs. Aglianico, Cabernet franc, Pinot gris and Riesling. BLASTn analysis of contigs greater than 500 bp length showed sequence identity between 88.5% and 95% with corresponding GRGV sequences reported from other countries. These results indicated the presence of genetically distinct isolates of GRGV. HTS data also revealed coinfection of GRGV in all samples with one or more of the following virus and/or viroids: grapevine rupestris stem pitting associated virus, grapevine rupestris vein feathering virus, hop stunt viroid or grapevine yellow speckle viroid-1. To further confirm infection by GRGV, total RNA was extracted from two asymptomatic Pinot gris vines previously tested positive in HTS using Spectrum Total RNA isolation kit and subjected to reverse transcription-PCR using primers specific to the replicase polyprotein gene of the virus (RG4847F: 5’-TGGTCTGTTGTTCGCATCTT-3’ and RG6076R: 5’ CGGAAGGGGAAGCATTGATCT-3’, Cretazzo et al., 2017). Sequence analysis of the approximately1,250 bp amplicons (accession number MT749359) showed 91.2 % nt sequence identity with corresponding sequence of GRGV isolate from Brazil (KX828704.1). To our knowledge, this is the first report of GRGV in Washington State. Together with the report of the occurrence of GRGV in California (Sabanadzovic et al. 2000), these/span> results indicate wide geographical distribution of the virus. Although GRGV can cause asymptomatic infections in grapevines (Martelli et al. 2002), the economic importance of GRGV as single or coinfections with other viruses needs to be examined to assess the potential significance of the virus to grape production and grapevine certification programs.

Virome of Grapevine Germplasm from the Anapa Ampelographic Collection (Russia)

“…It is difficult to ascertain symptoms for GRGV due to the presence of other viruses on the analyzed plants, including representatives of the Tymoviridae family [107]. Despite unclear symptomatology, the presence of GRGV has been reported in several European countries, namely Italy, Albania [117], Greece [106], Germany [118], France [119], as well as in Uruguay [102], China [120], the USA [121], and Iran [122]. GRGV has been reported in the germplasm collections of Brazil [61], Spain [107], Croatia [60], and France [62].…”

Investigation on Viral Pathogens in <i>Vitis vinifera</i> from Four Production Bases in Hangzhou Vicinity of China by sRNAseq and Molecular Validation

“…It was applied in virus diagnostic field of various grapevine cultivars and rootstock worldwide recent decade. Besides, the prevalent viral agents, grapevine vein clearing virus [6], grapevine gray norovirus [7], grapevine red leaf-associated virus, grapevine red blotch virus and citrus exocortis viroid [8], grapevine geminivirus A [9], grapevine berry inner necrosis virus and grapevine leaf-roll associated virus 13 [10] [11], grapevine hammerhead viroid [12], citrus cachexia viroid new strains [2], grapevine virus H [13], grapevine asteroid mosaic-associated virus [14], grapevine rupestris vein feathering virus [15], grapevine red globe virus [16], grapevine Kizil Sapak virus [17] and grapevine associated Jivivirus 1 [18] were detected in different grapevine cultivars and vicinities worldwide in succession by sRNA-seq.…”