Rhabdias mcguirei sp. nov., is described on the basis of specimens found in the lungs of northern Philippine flying lizards, Draco spilopterus (Reptilia, Agamidae) collected in Aurora province, Luzon Island, Philippines. It is characterized by a rounded oral opening, a buccal capsule consisting of anterior and posterior parts, and the shape of the cuticular inflation in the anterior part of the body: the cuticle is less inflated in the anterior-most part, with the inflation gradually thickening up to the level of the oesophageal-intestinal junction. The new species is differentiated from the 11 most closely related species of Rhabdias previously known from lizards.