The P II protein (glnB gene product) in the cyanobacterium Synechococcus sp. strain PCC 7942 signals the cellular N status by being phosphorylated or dephosphorylated at a seryl residue. Here we show that the P II -modifying system responds to the activity of ammonium assimilation via the glutamine synthetase-glutamate synthase pathway and to the state of CO 2 fixation. To identify possible functions of P II in this microorganism, a P II -deficient mutant was created and its general phenotype was characterized. The analysis shows that the P II protein interferes with the regulation of enzymes required for nitrogen assimilation, although ammonium repression is still detectable in the P II -deficient mutant. We suggest that the phosphorylation and dephosphorylation of P II are part of a complex signal transduction network involved in global nitrogen control in cyanobacteria. In this regulatory process, P II might be involved in mediating the tight coordination between carbon and nitrogen assimilation.As in all cyanobacteria, the utilization of sources of combined nitrogen is tightly regulated in the unicellular obligate photoautotroph Synechococcus sp. strain PCC 7942. This regulation is known as global nitrogen control (reviewed in reference 14). When cells are grown in the presence of ammonium, synthesis of enzymes required for the assimilation of other nitrogen sources is repressed, the high-affinity transport of methylammonium is inhibited, and the amount of glutamine synthetase is reduced. When ammonium is removed from the medium and dissolved inorganic carbon is available for assimilation, synthesis of these enzymes is derepressed, allowing the utilization of other N sources such as nitrate and nitrite (4,15,16). If no nitrogen compound is available, cyanobacteria like Synechococcus sp. strain PCC 7942 which cannot fix molecular nitrogen degrade their phycobiliproteins, a process termed chlorosis (7). Recently, a transcription factor, named NtcA, which is required for the induced expression of the genes that are subject to ammonium repression has been identified (44). The protein belongs to the family of cyclic AMP receptor protein-like gene activators, but the mechanism by which NtcA is regulated is not known to date (22).Another putative regulatory protein involved in nitrogen control has been found in Synechococcus sp. strains PCC 7942 and PCC 6301 by in vivo 32 P-labelling experiments. A strongly labelled 13-kDa polypeptide was shown to be homologous to the glnB gene product (P II protein) from different proteobacteria (42). P II functions as a central signal transmitter in nitrogen control in enteric bacteria (29,36). The protein signals nitrogen deficiency by being uridylylated at a tyrosyl residue. In its unmodified form, P II signals nitrogen sufficiency (1). Surprisingly, we found that the cyanobacterial P II protein is modified by phosphorylation at a seryl residue (12) rather than by uridylylation at the conserved tyrosyl residue. The phosphorylated protein can be resolved by electrophoresis into ...