Employing one-step hydrothermal treatment of ophenylenediamine and lysine to exploit their self-and copolymerization, four kinds of CDs (ECDs, NCDs, GCDs, and LCDs) are synthesized, possessing different surface groups (CH 3 , C−O−C, NH 2 , and COOH) and lipophilicity which endow them with various uptake pathways to achieve tunable organelle imaging. Specifically, highly lipophilic ECDs with CH 3 group and NCDs with C−O−C group select passive manner to target to endoplasmic reticulum and nucleus, respectively. Amphiphilic GCDs with CH 3 , C−O−C and NH 2 groups prefer caveolin-mediated endocytosis to locate at Golgi apparatus. Highly hydrophilic LCDs with CH 3 , NH 2 and COOH groups are involved in clathrin-mediated endocytosis to localize in lysosomes. Besides, imaging results of cell division, three-dimensional reconstruction and living zebrafish demonstrate that the obtained CDs are promising potential candidates for specific organelle-targeting imaging.