The formation of calcium carbonate scale in pipes and devices in water supply networks poses serious problems. Electromagnetic treatment (EMT) is a technology that can prevent the formation of these scales without the need to add chemical reagents, reducing maintenance costs in the installations. In this work, the types of crystals commonly found in water distribution systems are studied, with emphasis on the different techniques that allow their characterization (TGA, XRD, SEM), and the effects that EMT produces on their morphology. Laboratory trials have been carried out with synthetic water prepared from a calcium carbonate solution to study the crystals obtained at different temperatures, with and without EMT. High temperatures cause the production of aragonite instead of the stable form (calcite), as was observed in the samples from the heater resistors. In contrast, in the samples taken in lower temperature zones, a majority presence of calcite was observed. These results have been corroborated with a laboratory-scale evaporation trial, obtaining an increase in the aragonite/calcite ratio with increasing temperature and with the treatment applied, generating crystalline phases that exceed 70% aragonite (needle shape). It is highlighted that the EMT limits the reversion of aragonite to calcite and decreases the formation of scale.