Increasing evidence suggests that sulfur in ubiquitous ironsulfur clusters is derived from L-cysteine via cysteine desulfurases. In Escherichia coli, the major cysteine desulfurase activity for biogenesis of iron-sulfur clusters has been attributed to IscS. The gene that encodes IscS is a member of an operon isc-SUA, which also encodes two highly conserved proteins: IscU and IscA. Previous studies suggested that both IscU and IscA may act as the iron-sulfur cluster assembly scaffold proteins. However, recent evidence indicated that IscA is an iron-binding protein that can provide iron for the iron-sulfur cluster assembly in IscU (Ding, H., Harrison, K., and Lu, J. Iron-sulfur clusters are one of the most ancient and ubiquitous redox centers in almost all living organisms (1-3). Throughout evolution, iron-sulfur clusters have become integral parts of diverse biological processes including energy conversion and the regulation of gene expression. It is now clear that biogenesis of iron-sulfur clusters is not a spontaneous process. The pioneering work by Dean's group (4) revealed that sulfur in iron-sulfur clusters is derived from L-cysteine via cysteine desulfurases, a group of pyridoxal 5-phosphate-dependent enzymes that are conserved from bacteria to humans (5-7). In Escherichia coli, there are at least three cysteine desulfurases: IscS 2 (5), SufS (8), and CSD (cysteine sulfinate desulfinase) (9, 10). Deletion of gene iscS greatly diminishes the specific activities of iron-sulfur proteins in E. coli (11,12), suggesting that IscS is the major cysteine desulfurase for biogenesis of ironsulfur clusters. Gene iscS is a member of an operon iscSUA, which also encodes two highly conserved proteins: IscU and IscA (13,14). Biochemical studies indicated that IscS catalyzes desulfurization of L-cysteine and transfers sulfane sulfur for the iron-sulfur cluster assembly in IscU via specific protein-protein interactions (15-18). Accordingly, IscU was characterized as an iron-sulfur cluster assembly scaffold protein (15-21).The function of IscA, however, still remains elusive. Previous studies suggested that IscA is an alternative iron-sulfur cluster assembly scaffold protein (22-29), because IscA, like IscU, can bind iron-sulfur clusters in the presence of ferrous iron and sulfide in vitro. On the other hand, recent studies indicated that IscA is a novel iron binding protein with an iron association constant of 2.0 -3.0 ϫ 10 19 M Ϫ1 in the presence of the thioredoxin reductase system (30) or dithiothreitol (31) and that the iron-loaded IscA can provide iron for the iron-sulfur cluster assembly in IscU (32, 33). To reconcile the two models proposed for the function of IscA, here we re-evaluated the ironsulfur cluster binding activity of IscA and IscU under physiologically relevant conditions and found that in the presence of ferrous iron, L-cysteine, and cysteine desulfurase IscS, IscU is a preferred iron-sulfur cluster assembly scaffold protein. On the other hand, when L-cysteine is not present in the incubation solution, Isc...