Inducible chloramphenicol resistance genes cat and c*ml are regulated by translation attenuation. For both genes, the leader codons that must be translated to deliver a ribosome to the induction site specify a peptide that inhibits peptidyltransferase in vitro. The antipeptidyltransferase activity of the peptides is thought to select the site of ribosome stalling that is essential for Induction. Using variations of the cat-86 leader-encoded 5-mer peptide MVKTD, we demonstrate a correlation between the in vitro antipeptidyltransferase activity and the ability of the same peptide to support induction by chloramphenicol in vivo. MVKTD Peptide bond formation during translation is catalyzed by the ribosome-associated activity peptidyltransferase (PT) (21). PT is the target for several antibiotics including chloramphenicol and anisomycin (20). We have recently demonstrated that PT is also inhibited by the short peptides that are encoded by the leaders of attenuation regulated. chloramphenicol resistance genes (10, 12). The peptide inhibitors fall into two classes according to their sizes and specific inhibition. The leaders for inducible cat genes specify one class of PT-inhibitor peptides; the first five codons of the leaders encode 5-mer peptides that exhibit about 1/10 of the specific inhibition of chloramphenicol (10,12). The second class of inhibitor peptide consists of only one member, the eight-residue peptide that is encoded by the first eight codons of the cmlA leader (12). The cmlA 8-mer peptide is about one-half as inhibitory as chloramphenicol on SOS ribosomal subunits ofBacillus subtilis and is about fivefoldmore inhibitory than the cat leader peptides. Members of both classes of peptides may function similarly on the basis of their common footprints on 23S rRNA and the sensitivity of the inhibitory activity to competition by erythromycin (10). The mechanism of peptide inhibition of PT is probably not identical to that of chloramphenicol since the activities of chloramphenicol and the peptides are additive (10).The anti-PT activity of the leader peptides is thought to play a critical role in the translation attenuation regulation of cat (1,8,11,13,17,26) and cmlA (6,33) by selecting the site of ribosome stalling (10,12). Thus, the in vivo synthesis of the inhibitor peptides coincides with the translation by a ribosome to the leader site at which ribosome stalling will activate downstream gene expression (1, 10). Moreover, a missense mutation in the cat leader that prevents induction by chloram-* Corresponding author. Phone: (410) 455-2249. Fax: (410) 455-3875. phenicol causes an amino acid replacement in the 5-mer peptide that eliminates its anti-PT activity (12).In the present study we demonstrate that the in vitro inhibitory activity of a leader peptide correlates with the in vivo activity of the peptide in gene regulation. Examination of the peptide sensitivity of PT from several sources suggests that the target is a sequence or structure which is conserved in prokaryotic and eukaryotic ribosom...