Although individual cells vary in behavior during the formation of tissues, the nature of such variations are largely uncharacterized. Here, we tracked the morphologies and motilities of ∼300 human endothelial cells from an initial dispersed state to the formation of capillary-like structures, distilling the dynamics of tissue morphogenesis into an array of ∼36,000 numerical phenotypes. Quantitative analysis of population averages revealed two previously unidentified phases in which the cells spread before forming connections with neighboring cells and where the microvascular plexus stabilized before spatially reorganizing. Analysis at the single-cell level showed that in contrast to the population-averaged behavior, most cells followed distinct temporal patterns that were not reflected in the bulk average. Interestingly, some of these behavioral patterns correlated to the cells' final structural role within the plexus. Knowledge of how individual cells or groups of cells behave enhances our understanding of how native tissues self-organize and could ultimately enable more precise approaches for engineering tissues and synthesizing multicellular communities.vasculogenesis | systems biology | single-cell tracking | multispectral fluorescence microscopy | variability V ariations in the behaviors of individual cells during the morphogenesis of human tissues are likely to be important in shaping the evolution of multicellular structures (1). Knowledge of how individual cells behave and self-organize in native systems are also important in the design of synthetic systems, such as engineered tissues (1) and complex multicellular communities (2, 3). By contrast, population-averaged measurements, although widely used, are the end results of a large number of possible underlying statistical distributions and mask critical cell-to-cell variations (4). For example, the same population-averaged measurement could reflect either all cells behaving close to the average or the sum of many unique cellular behaviors. For the morphogenesis of a human tissue, the extent of cell-to-cell variations has thus far not been systematically studied and is currently largely unknown.Here, we directly tracked the behavior of every individual primary endothelial cell during the early stages of formation of human microvascular structures. Formation of microvessels is central to the etiology of many diseases (5) and critical for vascularizing newly engineered tissues for regenerative medicine (6). Formation of new capillaries, the smallest of the microvessels, can take place via vasculogenesis-the de novo formation of vascular networks from dispersed endothelial cells-both during prenatal development and in adults. For nearly three decades, microvasculogenesis has been studied by using well-established in vitro models (7,8). In particular, beginning with Folkman and up to recent studies (7, 9, 10), soft gels such as Matrigel have remained the most well-established in vitro system for controllably studying the initial steps of microvasculogenesis...