Editorial on the Research Topic Insights on fungal diversity of ascomycetes and basidiomycetes: taxonomy and interaction with their host Fungi, including both macro-and micro-ones, play a crucial role as natural bioresources. There are an estimated 2.2-3.8 million fungal species worldwide, with more than 92% of them still unknown (Hawksworth and Lücking, 2017;Antonelli et al., 2020). Ascomycetes and Basidiomycetes with the largest number of species are the two main phyla of fungi (Bhunjun et al., 2022). Many fungal species in these two phyla provide important genetic and metabolite resources for our industry, agriculture, medicine, as well as ecological equilibrium. However, the knowledge of both phyla remains significantly missing and awaiting further research. Some of them are similar in morphology but have a far phylogenetic relationship, while others are closely related but have great morphological differences (Lu et al., 2018(Lu et al., , 2022. Understanding the diversity and taxonomy of fungi in the Ascomycetes and Basidiomycetes are essential for unraveling their ecological roles, evolutionary relationships, and potential applications. In this Research Topic, we present a collection of research articles that delve into the exploration of fungal species, shedding light on their diversity, phylogeny, and morphological characteristics.The articles in this issue span various fungal taxa and geographic regions, providing valuable insights into their classification and evolutionary history. The discoveries of new species within genera such as Antrodia, Cantharellus, Thelephora, Steccherinum, and Podoscypha highlight the hidden diversity within these groups. Through a combination of morphological observations and molecular phylogenetic analyses, these studies provide a comprehensive understanding of the relationships and unique characteristics of these newly described species.