The nuclear factor B (NF-κB) subunits RelA, RelB, cRel, p50 and p52 are each critical for B-cell development and function. To systematically characterize their responses to canonical and non-canonical NF-κB pathway activity, we performed ChIP-seq analysis in lymphoblastoid B-cells (LCLs). We found a complex NF-κB binding landscape, which did not readily reflect the two NF-κB pathway paradigm. Instead, ten subunit binding patterns were observed at promoters and eleven at enhancers. Nearly one-third of NF-κB binding sites lacked κB motifs and were instead enriched for alternative motifs. The oncogenic forkhead box protein FOXM1 co-occupied nearly half of NF-κB binding sites, and was identified in protein complexes with NF-κB on DNA. FOXM1 knockdown decreased NF-κB target gene expression, and ultimately induced apoptosis, highlighting FOXM1 as a synthetic lethal target in B-cell malignancy. These studies provide a resource for understanding mechanisms that underlie NF-κB nuclear activity, and highlight opportunities for selective NF-κB blockade.