Introduction
Several studies indicate that polygenic obesity is linked to fat‐mass and obesity‐associated (
FTO
) genetic variants. Nevertheless, the link between variants in
FTO
and mental disorders has been barely explored. The present work aims to determine whether
FTO
genetic variants are associated with bipolar disorder and obesity, and to perform an in silico prediction of variant‐dependent functional impact on the developing brain transcriptome.
Methods
Four hundred and forty‐six Mexican mestizos were included in a genetic association analysis.
SNP
‐sequence kernel association test and linear mixed models were implemented for genetic association assessment. For functional impact prediction, we analyzed the mapping of regulatory elements, the modification of binding sites of transcription factors and the expression of transcription factors in the brain developing transcriptome, searching on different databases.
Results
In the set‐based analysis, we found different associated regions to
BD
(bipolar disorder) and obesity. The promoter flanking region of
FTO
intron 1 was associated with differential effects on
BMI
, while intron 2 of
RPGRIP
1L
and
FTO
upstream regions were associated with
BD
. The prediction analysis showed that
FTO
BD
‐associated variants disturb binding sites of
SP
1
and
SP
2;
obesity‐associated variants, on the other hand, disturb binding sites of
FOXP
1,
which are transcription factors highly expressed during prenatal development stages of the brain.
Conclusion
Our results suggest a possible effect of
FTO
variants on neurodevelopment in obesity and bipolar disorder, which gives new insights into the molecular mechanism underlying this association.