DNA sequences coding for simian virus 40 (SV40) large T antigen have been detected at different frequencies in human non-Hodgkin's lymphomas (NHL) by PCR techniques as well as immunohistochemistry. A highly sensitive quantitative real-time PCR specific for a sequence of SV40 large T antigen was established to test whether SV40 DNA is present in malignant lymphomas of German patients. Thirty-three lymph node samples obtained from 27 patients with NHL and 6 patients with Hodgkin's disease (HD) were tested in addition to 48 samples of peripheral blood mononuclear cells (PBMNC) from patients with NHL containing between 0.1% and >90% circulating lymphoma cells determined by PCR. Fourteen lymph nodes obtained from patients with other diseases than malignant lymphomas and 47 PBMNC samples from healthy volunteers served as controls. All samples from patients with malignant lymphomas and all controls were negative for SV40 DNA by quantitative real-time. In contrast, EBV-DNA could be detected in 29 of 46 DNA preparations isolated from lymph nodes (63%) and in 20 of 47 DNA preparations from PBMNC. EBV-positive samples contained between 5 and 80,000 EBV copies per 100,000 cells. Our results do not support the hypothesis that SV40 plays a major role in the etiology of malignant lymphomas and, in addition, they exclude a clonal SV 40 infection of malignant lymphoma cells in all samples investigated. ' 2005 Wiley-Liss, Inc.Key words: SV40; malignant NHL; quantitative real-time PCR; EBV Simian virus 40 (SV40) is a small double stranded DNA virus of 5243 bp belonging to the polyomaviruses. The primary viral gene product is the SV40 large T antigen, a nuclear phosphoprotein with multiple functions essential for virus replication and transformation of rodent and human cells. [1][2][3] The large T antigen is encoded by 2 exons corresponding to nucleotides 2691-4571 and 4918-5163. In SV40 infected cells large T antigen forms a complex with nuclear proteins, such as p53 and pRb, thereby inactivating their function. 4 The oncogenicity of SV40 has been shown in experiments when the virus was injected into hamsters. Depending on the route of inoculation a variety of tumors were found including ependymomas, choroid plexus papillomas, brain tumors, osteosarcomas, soft tissue sarcomas mesotheliomas and lymphomas. 5 The natural hosts of SV40 are Asian macaques and infections of humans seem to occur only upon close contact with infected monkeys or their tissues. 6-8 Between 1955 and 1963 in the United States, Canada and Europe millions of children and adults below 40 years of age were accidentally exposed to the virus by SV40-contaminated poliovirus and adenovirus vaccines prepared from monkey kidney cells by receiving one or more doses of a vaccine contaminated with live virus. 6,9 During the following 20 years laboratories all over the world have reported the isolation of SV40 from cultured human tumor cells by fusion with permissive cells 10,11 or the presence of nucleic acid sequences homologous to SV40, in particular to the SV40 lar...