Infectious gastroenteritis is one of the most common diseases in young children. To clarify the infectious etiology of diarrhea in Danish children less than 5 years of age, we conducted a 2-year prospective case-control study. Stools from 424 children with diarrhea and 870 asymptomatic age-matched controls were examined, and their parents were interviewed concerning symptoms. Rotavirus, adenovirus, and astrovirus were detected by enzyme-linked immunosorbent assay, and norovirus and sapovirus were detected by PCR. Salmonella, thermotolerant Campylobacter, Yersinia, Shigella, and Vibrio spp. were detected by standard methods. Shiga toxinproducing (STEC), attaching-and-effacing (A/EEC), enteropathogenic (EPEC), enterotoxigenic, enteroinvasive, and enteroaggregative Escherichia coli were detected by using colony hybridization with virulence gene probes and serotyping. Parasites were detected by microscopy. Overall, a potential pathogen was found in 54% of cases. More cases than controls were infected with rotavirus, Salmonella, norovirus, adenovirus, Campylobacter, sapovirus, STEC, classical EPEC, Yersinia, and Cryptosporidium strains, whereas A/EEC, although common, was not associated with illness. The single most important cause of diarrhea was rotavirus, which points toward the need for a childhood vaccine for this pathogen, but norovirus, adenovirus, and sapovirus were also major etiologies. Salmonella sp. was the most common bacterial pathogen, followed by Campylobacter, STEC, Yersinia, and classical EPEC strains. A/EEC not belonging to the classical EPEC serotypes was not associated with diarrhea, underscoring the importance of serotyping for the definition of EPEC.Infectious gastroenteritis is one of the most common diseases in humans, with particularly high morbidity in children younger than 5 years of age (3). In industrialized countries, such as Denmark, the associated mortality is low, but the social burden and economic costs due to care of ill children and parents' absence from work are substantial because of the high incidence. Rotavirus is known to be the most common cause of severe acute, watery diarrhea in children under 5 years of age in industrialized and developing parts of the world (14, 43). In recent decades other new etiologies of diarrhea have been recognized, including noro-and sapovirus, Shiga toxin-producing Escherichia coli (STEC), and enteroaggregative E. coli (EAggEC). Furthermore, the incidence of food-borne Campylobacter and Salmonella infections has increased in many industrialized countries.Several case-control or cohort studies of enteropathogens associated with childhood diarrhea have been conducted in developing countries, but only a few analytical studies covering a broad range of newly discovered diarrheal agents have been undertaken in Europe (5,8,25,35). Many studies have focused on either bacterial or viral etiologies of diarrhea (7,27,38). The present study, comprising examinations for bacteria, virus, and parasites, was conducted to clarify the most common infectious etiol...