From genomics to metabolomics: Deciphering sanguinarine biosynthesis in Dicranostigma leptopodum

Lei, Weixiao; Zhu, Hui; Cao, Man; Zhang, Feng; Lai, Qing; Lu, Shengming; Dong, Wenpan; Sun, Jiahui; Ru, Dafu

doi:10.1016/j.ijbiomac.2023.128727

Cited by 4 publications

(3 citation statements)

References 144 publications

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“…This genomic architecture is consistent with observations from C. camphora, indicating a shared evolutionary approach within the genus (Shen et al, 2022). This pattern of gene duplication and clustering is prevalent in plant genomes and is frequently linked to the rapid evolution of gene families that respond to ecological and environmental stressors (Yang et al, 2021;Lei et al, 2024).…”

Section: Discussionsupporting

confidence: 87%

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Section: Discussionsupporting

confidence: 87%

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Section: Discussionsupporting

confidence: 87%

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“…This genomic architecture is consistent with observations from C. camphora , indicating a shared evolutionary approach within the genus ( Shen et al., 2022 ). This pattern of gene duplication and clustering is prevalent in plant genomes and is frequently linked to the rapid evolution of gene families that respond to ecological and environmental stressors ( Yang et al., 2021 ; Lei et al., 2024 ).…”

Section: Discussionmentioning

confidence: 99%

Chromosome genome assembly of the Camphora longepaniculata (Gamble) with PacBio and Hi-C sequencing data

Yan,

Zhu,

Cao

et al. 2024

Front. Plant Sci.

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IntroductionCamphora longepaniculata, a crucial commercial crop and a fundamental component of traditional Chinese medicine, is renowned for its abundant production of volatile terpenoids. However, the lack of available genomic information has hindered pertinent research efforts in the past.MethodsTo bridge this gap, the present study aimed to use PacBio HiFi, short-read, and highthroughput chromosome conformation capture sequencing to construct a chromosome-level assembly of the C. longepaniculata genome. Results and discussionWith twelve chromosomes accounting for 99.82% (766.69 Mb) of the final genome assembly, which covered 768.10 Mb, it was very complete. Remarkably, the assembly’s contig and scaffold N50 values are exceptional as well—41.12 and 63.78 Mb, respectively—highlighting its excellent quality and intact structure. Furthermore, a total of 39,173 protein-coding genes were predicted, with 38,766 (98.96%) of them being functionally annotated. The completeness of the genome was confirmed by the Benchmarking Universal Single-Copy Ortholog evaluation, which revealed 99.01% of highly conserved plant genes. As the first comprehensive assembly of the C. longepaniculata genome, it provides a crucial starting point for deciphering the complex pathways involved in terpenoid production. Furthermore, this excellent genome serves as a vital resource for upcoming research on the breeding and genetics of C. longepaniculata.

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From genomics to metabolomics: Deciphering sanguinarine biosynthesis in Dicranostigma leptopodum

Cited by 4 publications

References 144 publications

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Chromosome genome assembly of the Camphora longepaniculata (Gamble) with PacBio and Hi-C sequencing data

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