From Metagenomics to Ecogenomics: NGS-Based Approaches for Discovery of New Circular DNA Single-Stranded Viral Species

Guevara-Rivera, Enrique A.; Rodríguez-Negrete, Edgar A.; Lozano-Durán, Rosa; Bejarano, Eduardo R.; Torres-Calderón, Alan M.; Arce-Leal, Ángela P.; Leyva-López, Norma E.; Méndez-Lozano, Jesús

doi:10.1007/978-1-0716-3515-5_7

Methods in Molecular Biology

2023

DOI: 10.1007/978-1-0716-3515-5_7

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From Metagenomics to Ecogenomics: NGS-Based Approaches for Discovery of New Circular DNA Single-Stranded Viral Species

Enrique A. Guevara-Rivera,

Edgar A. Rodríguez-Negrete,

Rosa Lozano-Durán

et al.

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2024

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Maize Streak Virus: Single and Gemini Capsid Architecture

Bennett,

Hull,

Mietzsch

et al. 2024

Viruses

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Geminiviridae are ssDNA plant viruses whose control has both economical and agricultural importance. Their capsids assemble into two distinct architectural forms: (i) a T = 1 icosahedral and (ii) a unique twinned quasi-isometric capsid. Described here are the high-resolution structures of both forms of the maize streak virus using cryo-EM. A comparison of these two forms provides details of the coat protein (CP) and CP–CP and CP–genome interactions that govern the assembly of the architecture of the capsids. Comparative analysis of other representative members of Geminiviridae reveals structural conservation of 60–95% compared to a sequence similarity of 21–30%. This study provides a structural atlas of these plant pathogens and suggests possible antiviral-targetable regions of these capsids.

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Maize Streak Virus: Single and Gemini Capsid Architecture

Bennett,

Hull,

Mietzsch

et al. 2024

Viruses

View full text Add to dashboard Cite

show abstract

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From Metagenomics to Ecogenomics: NGS-Based Approaches for Discovery of New Circular DNA Single-Stranded Viral Species

Cited by 1 publication

References 43 publications

Maize Streak Virus: Single and Gemini Capsid Architecture

Maize Streak Virus: Single and Gemini Capsid Architecture

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