Klemcke HG, DeKroon RM, Mocanu M, Robinette JB, Alzate O. Cardiac mitochondrial proteomic expression in inbred rat strains divergent in survival time after hemorrhage. Physiol Genomics 45: 243-255, 2013. First published February 5, 2013 doi:10.1152/physiolgenomics.00118.2012.-We have previously identified inbred rat strains differing in survival time to a severe controlled hemorrhage (StaH). In efforts to identify cellular mechanisms and ultimately genes that are important contributors to enhanced STaH, we conducted a study to characterize potential differences in cardiac mitochondrial proteins in these rats. Inbred rats from three strains [Brown Norway/Medical College of Wisconsin (BN); Dark Agouti (DA), and Fawn Hooded Hypertensive (FHH)] with different StaH (DA ϭ FHH Ͼ BN) were assigned to one of three treatment groups (n ϭ 4/strain): nonoperated controls, surgically catheterized rats, or rats surgically catheterized and hemorrhaged 24 h postsurgery. Rats were euthanized 30 min after handling or 30 min after initiation of a 26 min hemorrhage. After euthanasia, hearts were removed and mitochondria isolated. Differential protein expression was determined using 2D DIGE-based Quantitative Intact Proteomics and proteins identified by MALDI/TOF mass spectrometry. Hundreds of proteins (791) differed among inbred rat strains (P Յ 0.038), and of these 81 were identified. Thirty-eight were unique proteins and 43 were apparent isoforms. For DA rats (longest STaH), 36 proteins increased and 30 decreased compared with BN (shortest STaH). These 81 proteins were associated with lipid (e.g., acyl CoA dehydrogenase) and carbohydrate (e.g., fumarase) metabolism, oxidative phosphorylation (e.g., ubiquinol-cytochrome C reductase), ATP synthesis (F1 ATPase), and H2S synthesis (3-mercaptopyruvate sulfurtransferase). Although we cannot make associations between these identified mitochondrial proteins and StaH, our data do provide evidence for future candidate proteins with which to consider such associations. inbred rats; hemorrhage; proteomics; respiration; cellular pathways; mitochondrial proteomics; 2D DIGE; quantitative intact proteomics PREVIOUS INVESTIGATIONS IN humans (114), dogs (32), and rats (125) have indicated considerable variability in their ability to survive severe hemorrhage and attendant shock. In attempts to understand the nature of this variability, we have recently initiated studies to identify genetic determinants of survival time after controlled hemorrhage (StaH) (68 -69). Our initial investigations have identified several inbred rat strains sufficiently divergent in survival time to warrant their continued use for further genetic-and cellular-level investigations (68, 69). To supplement our search for genetic determinants, in the current study we have investigated mitochondrial characteristics of inbred rat strains divergent in After acute hemorrhage a complex of interacting systemslevel responses occur as the body attempts to maintain homeostasis (101). As the biological pump that provides oxygen and nutr...