“…the two hypothetical metabolic pathways of Figure 1, including metabolites M1-M8 and the enzymes catalyzing individual reactions (e1-e7), for instance, include: i) a reaction which connects the two pathways so that metabolites M2-M4 can be products of a distinct series of reactions and have two different precursors (M1 and M5); ii) the end product of one pathway (M4) is a modulator of a protein component having a role of effector/transducer (eFy2) in a signaling pathway; 2 A mechanistic frame for toxicity pathways at a cellular level the molecular machinery of cells is structured through basic processes bringing about and controlling the functioning of the system, hierarchically organized as depicted by the so-called Central Dogma (Crick, 1958(Crick, , 1970. Signaling pathways and their perturbed versions (tPs), therefore, are parts of the full machinery, and emphasis on specific sequences of events in experimental studies is often aimed at characterizing elements in the entire systems, either under normal conditions or in molecular toxicology settings (see, for instance, Rossini, 2005;Kholodenko, 2006;Natarajan et al, 2006;Krewski et al, 2011;. the normal functioning cell, in fact, must be considered as a network of components with relevant interactions between and among subsets of elements (Hartwell et al, 1999;Kholodenko, 2006).…”