The cystic ®brosis transmembrane conductance regulator (CFTR) gene shows a complex pattern of expression, with temporal and spatial regulation that is not accounted for by elements in the promoter. One approach to identifying the regulatory elements for CFTR is the mapping of DNase I hypersensitive sites (DHS) within the locus. We previously identi®ed at least 12 clusters of DHS across the CFTR gene and here further evaluate DHS in introns 2, 3, 10, 16, 17a, 18, 20 and 21 to assess their functional importance in regulation of CFTR gene expression. Transient transfections of enhancer/reporter constructs containing the DHS regions showed that those in introns 20 and 21 augmented the activity of the CFTR promoter. Structural analysis of the DNA sequence at the DHS suggested that only the one intron 21 might be caused by inherent DNA structures. Cell speci®city of the DHS suggested a role for the DHS in introns 2 and 18 in CFTR expression in some pancreatic duct cells. Finally, regulatory elements at the DHS in introns 10 and 18 may contribute to upregulation of CFTR gene transcription by forskolin and mitomycin C, respectively. These data support a model of regulation of expression of the CFTR gene in which multiple elements contribute to tightly co-ordinated expression in vivo.Keywords: CFTR; regulation; DNase I hypersensitive sites.The cystic ®brosis transmembrane conductance regulator (CFTR) gene shows a tightly regulated pattern of temporal and spatial expression though the elements responsible for this remain poorly characterized. We previously identi®ed DNase I hypersensitive sites (DHS) across 400 kb¯anking the CFTR gene in order to locate potential regulatory elements [1±5]. These DHS lie 5¢ to the gene at )79.5 and )20.9 kb with respect to the translational start site; in introns 1, 2, 3, 10, 16, 17a, 18, 20 and 21; and 3¢ to the gene at +5.4 to +7.4 and +15.6 kb (Fig. 1). DHS are often, but not always, associated with regulatory elements in chromatin. As we have identi®ed multiple clusters of DHS, it is possible that not all of these represent important regulatory elements for the CFTR gene. The aim of this work was to evaluate the regions of the CFTR gene containing the DHS to identify those containing important regulatory elements. In vitro analyses of the DHS regions have included evaluation in enhancer/reporter gene constructs where luciferase activity is driven by the CFTR basal promoter and DNA¯anking the DHS is inserted into the enhancer site of the vector. The results suggest that in addition to the DHS in intron 1 (at 185 + 10 kb) which was previously shown to increase CFTR promoter activity [2], the DHS in intron 20 (at 4005 + 4 kb) also augments promoter activity and the DHS in intron 21 (at 4095 +7.2 kb) has modest enhancer activity.The majority of the DHS were initially identi®ed in the Caco2 colon carcinoma cell line [5]. We have now looked for tissue-speci®c regulatory elements by analysing chromatin structure at these DHS in two pancreatic adenocarcinoma cell lines Capan1 [6] and NP31 [7...