The N-terminal domain (NTD) and the ligand-binding domain (LBD) of the androgen receptor (AR) exhibit a ligand-dependent interaction (N/C interaction). Amino acids 3-36 in the NTD (AR 3)36 ) play a dominant role in this interaction. Previously, it has been shown that a FxxFF motif in AR 3)36 , 23 FxxLF 27 , is essential for LBD interaction. We demonstrate in the current study that AR 3)36 can be subdivided into two functionally distinct fragments: AR 3)13 and AR 16)36 . AR 3)13 does not directly interact with the AR LBD, but rather contributes to the transactivation function of the AR.NTD-AR.LBD complex. AR 16)36, encompassing the 23 FxxLF 27 motif, is predicted to fold into a long amphipathic a-helix. A second FxxFF candidate protein interaction motif within the helical structure, 30 VREVI 34 , shows no affinity to the LBD. Within AR 16)36 , amino acid residues in and flanking the 23 FxxLF 27 motif are demonstrated to modulate N/C interaction. Substitution of Q24 and N25 by alanine residues enhances N/C interaction. Substitution of amino acids flanking the 23 FxxLF 27 motif by alanines are inhibitory to LBD interaction.