We have investigated the molecular mechanisms whereby the I-II loop controls voltage-dependent inactivation in P/Q calcium channels. We demonstrate that the I-II loop is localized in a central position to control calcium channel activity through the interaction with several cytoplasmic sequences; including the III-IV loop. Several experiments reveal the crucial role of the interaction between the I-II loop and the III-IV loop in channel inactivation. First, point mutations of two amino acid residues of the I-II loop of Ca v 2.1 (Arg-387 or Glu-388) facilitate voltage-dependent inactivation. Second, overexpression of the III-IV loop, or injection of a peptide derived from this loop, produces a similar inactivation behavior than the mutated channels. Third, the III-IV peptide has no effect on channels mutated in the I-II loop. Thus, both point mutations and overexpression of the III-IV loop appear to act similarly on inactivation, by competing off the native interaction between the I-II and the III-IV loops of Ca v 2.1. As they are known to affect inactivation, we also analyzed the effects of  subunits on these interactions. In experiments in which the  4 subunit is co-expressed, the III-IV peptide is no longer able to regulate channel inactivation. We conclude that (i) the contribution of the I-II loop to inactivation is partly mediated by an interaction with the III-IV loop and (ii) the  subunits partially control inactivation by modifying this interaction. These data provide novel insights into the mechanisms whereby the  subunit, the I-II loop, and the III-IV loop altogether can contribute to regulate inactivation in high voltage-activated calcium channels.The influx of calcium through voltage-gated calcium channels controls a variety of cellular processes ranging from membrane excitability and synaptic efficacy to gene expression. Both the amplitude and the duration of the calcium influx shape the spatio-temporal efficacy of calcium signaling. A tight control of both processes is needed to avoid long term increases in intracellular calcium levels, which are cytotoxic to neurons. Although the control of calcium entry can be achieved in several ways, inactivation of voltage-gated calcium channels appears to represent a key molecular process. For instance, inactivation is considered as a candidate mechanism for synaptic depression (1, 2). Inasmuch as there are several calcium channel types, there are also several inactivation behaviors. L-type calcium channels inactivate slowly, whereas the neuronal N-, P/Q-, and R-type channels inactivate faster. These fundamental differences are linked to the pore-forming Ca v subunit, which contains the major molecular determinants for inactivation, although auxiliary subunits can play a regulatory function in this process.