The human
TRA2B
gene consists of 10 exons and 9 introns and produces 5 splice isoforms (
TRA2β1
to
TRA2β5
).
TRA2B
exon 2 encodes multiple premature termination codons.
TRA2β1
lacks exon 2 and is translated into a functional transformer 2β (Tra2
β
) protein, whereas
TRA2β4
contains 10 exons and works as a functional RNA. Overexpressed Tra2
β
and ectopic expression of
TRA2β4
may be oncogenic. We found that heterogeneous nuclear ribonucleoprotein (hnRNP)A1 and hnRNPU interacted with
TRA2β4
exon 2. Minigene assays revealed that hnRNPA1 facilitated inclusion of exon 2, whereas hnRNPU promoted its skipping. However, knockdown of hnRNPA1 or hnRNPU reduced both
TRA2β1
and
TRA2β4
levels, and overexpression of these hnRNPs increased levels of both isoforms, suggesting that hnRNPA1 and hnRNPU mainly regulate the transcription of
TRA2B
. In fact, hnRNPA1 and hnRNPU positively regulated the promoter activity of
TRA2B
. Circular dichroism analyses, electrophoretic mobility shift assays and chromatin immunoprecipitation assays demonstrated the presence of G-quadruplex (G4) formation in the promoter of
TRA2B
. Formation of G4 suppressed
TRA2B
transcription, whereas hnRNPA1, but not hnRNPU, interacted with the G4 to facilitate transcription. Our results suggest that hnRNPA1 may modulate
TRA2B
transcription through its regulation of G4 formation in its promoter in colon cancer cells.