Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species

Hyde, Kevin D.; Norphanphoun, Chada; Abreu, Vanessa Pereira de; Bazzicalupo, Anna; Chethana, K. W. Thilini; Clericuzio, Marco; Dayarathne, Monika C.; Dissanayake, Asha J.; Ekanayaka, Anusha H.; He, Mao-Qiang; Hongsanan, Sinang; Huang, Shi-Ke; Jayasiri, Subashini C.; Jayawardena, Ruvishika S.; Karunarathna, Anuruddha; Konta, Sirinapa; Kušan, Ivana; Lee, Hyun; Li, Junfu; Lin, Chuan-Gen; Liu, Ning-Guo; Lu, Yong‐Zhong; Luo, Zong-Long; Manawasinghe, Ishara S.; Mapook, Ausana; Perera, Rekhani H.; Phookamsak, Rungtiwa; Phukhamsakda, Chayanard; Siedlecki, Igor; Soares, Adriene Mayra; Tennakoon, Danushka S.; Tian, Qing; Tibpromma, Saowaluck; Wanasinghe, Dhanushka N.; Xiao, Yuan-Pin; Yang, Jing; Zeng, Xiang‐Yu; Abdel-Aziz, Faten A.; Li, Wenjing; Senanayake, Indunil C.; Shang, Qiu-Ju; Daranagama, Dinushani A.; Silva, Nimali I. de; Thambugala, Kasun M.; Abdel-Wahab, Mohamed A.; Bahkali, Ali H.; Berbee, Mary L.; Boonmee, Saranyaphat; Bhat, D. Jayarama; Bulgakov, Timur S.; Buyck, Bart; Camporesi, Erio; Castañeda-Ruíz, Rafael F.; Chomnunti, Putarak; Doilom, Minkwan; Dovana, Francesco; Gibertoni, Tatiana Baptista; Jadan, Margita; Jeewon, Rajesh; Jones, E. B. Gareth; Kang, Ji-Chuan; Karunarathna, Samantha C.; Lim, Young Woon; Liu, Jian‐Kui; Zuo-yi, Liu; Plautz, Helio Longoni; Lumyong, Saisamorn; Maharachchikumbura, Sajeewa S. N.; Matočec, Neven; McKenzie, Eric H. C.; Mešić, Armin; Miller, Daniel R.; Pawłowska, Julia; Pereira, Olinto Liparini; Promputtha, Itthayakorn; Romero, Andrea Irene; Ryvarden, Leif; Su, Hong-Yan; Suetrong, Satinee; Tkalčec, Zdenko; Vizzini, Alfredo; Wen, Ting‐Chi; Wisitrassameewong, Komsit; Wrzosek, Marta; Xu, Jianchu; Zhao, Qi; Zhao, Rui-Lin; Mortimer, Peter E.

doi:10.1007/s13225-017-0391-3

Cited by 186 publications

(193 citation statements)

References 263 publications

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“…The sequences were assembled by GENEIOUS Pro v. 11.0.5 (Biomatters) and BLAST searches were made to retrieve the closest matches in GenBank and multiple alignment also included recently published sequences (Norphanphoun et al 2017, Hyde et al 2017, 2018). Combined analyses of ITS1, 5.8S, ITS2, LSU, RPB2 and ACT sequence data of 86 taxa were performed under different optimality criteria (MP, ML, BI).…”

Section: Methodsmentioning

confidence: 99%

“…Cytospora species are phytopathogens or saprobes (Wehmeyer 1975, Barr 1978, Eriksson 2001, Castlebury et al 2002, Wijayawardene et al 2018). Cytospora has a worldwide distribution and is an important pathogenic genus, causing canker and dieback disease on branches of a wide range of plants (Adams et al 2005, 2006, Hyde et al 2017, Norphanphoun et al 2017). Currently, there are 614 epithets for Cytospora (Index Fungorum 2018, 14 June 2018) with an estimated 110 species in Kirk et al (2008).…”

Section: Introductionmentioning

confidence: 99%

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Morphological and phylogenetic characterisation of novel Cytospora species associated with mangroves

Norphanphoun

Raspé

Jeewon

et al. 2018

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Mangroves are relatively unexplored habitats and have been shown to harbour a number of novel species of fungi. In this study, samples of microfungi were collected from symptomatic branches, stem and leaves of the mangrove species Xylocarpusgranatum, X.moluccensis and Lumnitzeraracemosa and examined morphologically. The phylogeny recovered supports our morphological data to introduce three new species, Cytosporalumnitzericola, C.thailandica and C.xylocarpi. In addition, a combined multi-gene DNA sequence dataset (ITS, LSU, ACT and RPB2) was analysed to investigate phylogenetic relationships of isolates and help in a more reliable species identification.

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Section: Methodsmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Morphological and phylogenetic characterisation of novel Cytospora species associated with mangroves

Norphanphoun

Raspé

Jeewon

et al. 2018

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“…Fungal species identification has traditionally been based on direct observation, microscope examination, culture dependent isolation and phylogenetic analysis (Cai et al 2011;Hyde et al 2010Hyde et al , 2017Rastogi and Sani 2011;Fadrosh et al 2014. Such studies have investigated the microbial ecology of various environments (Rastogi and Sani 2011).…”

Section: Introductionmentioning

confidence: 99%

Biodiversity of fungi on Vitis vinifera L. revealed by traditional and high-resolution culture-independent approaches

et al. 2018

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This study is unique as it compares traditional and high-resolution culture-independent approaches using the same set of samples to study the saprotrophic fungi on Vitis vinifera. We identified the saprotrophic communities of table grape (Red Globe) and wine grape (Carbanate Gernischet) in China using both traditional and culture-independent techniques. The traditional approach used direct observations based on morphology, single spore isolation and phylogenetic analysis yielding 45 taxa which 19 were commonly detected in both cultivars. The same set of samples were then used for Illumina sequencing which analyzed ITS1 sequence data and detected 226 fungal OTUs, of which 176 and 189 belong to the cultivars Carbanate Gernischet and Red Globe, respectively. There were 139 OTUs shared between the two V. vinifera cultivars and 37 and 50 OTUs were specific to Carbanate Gernischet and Red Globe cultivars respectively. In the Carbanate Gernischet cultivar, Ascomycota accounted for 77% of the OTUs and in Red Globe, almost all sequenced were Ascomycota. The fungal taxa overlap at the genus and species level between the traditional and culture-independent approach was relatively low. In the traditional approach we were able to identify the taxa to species level, while in the culture-independent method we were frequently able to identify the taxa to family or genus level. This is remarkable as we used the same set of samples collected in China for both approaches. We recommend the use of traditional techniques to accurately identify taxa. Culture-independent method can be used to get a better understanding about the organisms that are present in a host in its natural environment. We identified primary and secondary plant pathogens and endophytes in the saprotrophic fungal communities, which support previous observations, that dead plant material in grape vineyards can be the primary sources of disease. Finally, based on present and previous findings, we provide a worldwide checklist of 905 fungal taxa on Vitis species, which includes their mode of life and distribution.

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“…Dictyocheirospora is morphologically similar to Dictyosporium except in having cheiroid, non-complanate or cylindrical conidia, mostly with conidial arms closely gathered together at the apex. Ten species are accepted in the genus including four species transferred from Dictyosporium (Boonmee et al 2016, Wang et al 2016, Hyde et al 2017, Li et al 2017). …”

Section: Introductionmentioning

confidence: 99%

New species in Dictyosporium, new combinations in Dictyocheirospora and an updated backbone tree for Dictyosporiaceae

Yang

Liu

Hyde

et al. 2018

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A survey of freshwater fungi on submerged wood in China and Thailand resulted in the collection of three species in Dictyocheirospora and four species in Dictyosporium including two new species in the latter genus. Morphological characters and phylogenetic analyses based on ITS, LSU and TEF1α sequence data support their placement in Dictyocheirospora and Dictyosporium (Dictyosporiaceae). An updated backbone tree is provided for the family Dictyosporiaceae. Descriptions and illustrations of the new taxa and re-collections are provided. Four new combinations are proposed for Dictyocheirospora.

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Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species

Cited by 186 publications

References 263 publications

Morphological and phylogenetic characterisation of novel Cytospora species associated with mangroves

Morphological and phylogenetic characterisation of novel Cytospora species associated with mangroves

Biodiversity of fungi on Vitis vinifera L. revealed by traditional and high-resolution culture-independent approaches

New species in Dictyosporium, new combinations in Dictyocheirospora and an updated backbone tree for Dictyosporiaceae

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