Abstract-During the last decade Fuzzy Cognitive Maps (FCM)have become a useful tool for solving unstructured problems. In a few words they could be defined as Recurrent Neural Networks for simulating complex systems, where neurons denote concepts, objects or entities of the investigated system. Normally FCM are entirely designed using the best knowledge of a group of experts in a given domain, so frequently learning algorithms for tuning the model parameters are required. Despite the theoretical advances in such fields, the lack of a suitable computational framework for handling FCM-based systems is still an open problem. This paper introduces a novel tool for designing and simulating FCM which gathers several learning algorithms for adjusting the introduced parameters. More specifically, the framework includes supervised and unsupervised learning algorithms for computing the causal weights, algorithms for optimizing the network topology in large FCM (without losing significant information) and also methods for improving the global convergence on continuous FCM. It should be stated that these algorithms are oriented to prediction tasks, but they could be easily extended to other fields. Index Terms -FCM, prediction problems, modeling, learning algorithms, computational framework.