The ligand-gated ion channel superfamily plays a critical role in neuronal excitability. The functions of glycine receptor (GlyR) and nicotinic acetylcholine receptor are modulated by G protein ␥ subunits. The molecular determinants for this functional modulation, however, are still unknown. Studying mutant receptors, we identified two basic amino acid motifs within the large intracellular loop of the GlyR ␣ 1 subunit that are critical for binding and functional modulation by G␥. Mutations within these sequences demonstrated that all of the residues detected are important for G␥ modulation, although both motifs are necessary for full binding. Molecular modeling predicts that these sites are ␣-helixes near transmembrane domains 3 and 4, near to the lipid bilayer and highly electropositive. Our results demonstrate for the first time the sites for G protein ␥ subunit modulation on GlyRs and provide a new framework regarding the ligand-gated ion channel superfamily regulation by intracellular signaling.The ionotropic glycine receptors (GlyRs) 2 are members of the ligand-gated ion receptor superfamily, which includes inhibitory ␥-aminobutyric acid type A receptors and excitatory nAChR and 5-HT 3 receptors. These homologous receptors mediate fast synaptic transmission in the central nervous system (1, 2). Inhibitory GlyRs are critical for the control of excitability in the mammalian spinal cord and brain stem. Binding of glycine to the extracellular region induces a rapid increase in Cl Ϫ ion conductance, generating a hyperpolarization of the cell membrane (3-5). In neurons, the inhibitory action of GlyRs regulate several important physiological functions, like pain transmission, respiratory rhythms, motor coordination, and development (3-7). Like all members of the LGIC superfamily, GlyRs are pentamers composed of five subunits in which each subunit possesses four transmembrane domains arranged to form the ion pore. In this structure, the individual subunits provide extracellular and intracellular domains that play roles in ligand binding and intracellular modulation, respectively (1-3, 5).The function of GlyRs can be effectively modulated by extracellularly acting compounds like strychnine, picrotoxin, zinc ions, and ethanol (3-5, 8, 9). Furthermore, the receptor can also be modulated by intracellular signaling. One of the most studied and recognized pathways involved in regulation of ligandgated ion channel function are phosphorylation processes through protein kinases. Indeed, GlyR and other members of the LGIC superfamily are modulated by activation of cAMPdependent kinases and protein kinase C (10). This involves specific serine residues in the loop between transmembrane domains 3 and 4 (6, 10 -14). On the other hand, recent reports have shown that the activity of GlyRs and nAChRs can be modulated by G protein ␥ subunits in a phosphorylation-independent manner (15, 16). In both cases, activation of G proteins, using nonhydrolyzable GTP analogs or by application of purified G␥ dimers, generates a strong e...