Key pointsr Partial sensory deprivation (deafferentation) by removing whiskers from the rat snout resulted in a reduced responsiveness of related cortical representations.r Repetitive transcranial magnetic stimulation (three blocks of intermittent theta-burst) applied for 5 days in combination with sensory exploration restored the normal responsiveness level of the deafferented barrel cortex. r However, intracortical inhibition (lateral and recurrent) appeared to be reduced after repetitive transcranial magnetic stimulation, probably as the cause of improved responsiveness.r Repetitive transcranial magnetic stimulation also reduced the asymmetry of the lateral spread of sensory activity.Abstract Repetitive transcranial magnetic stimulation (rTMS) modulates human cortical excitability. It has the potential to support recovery to normal cortical function when the excitation-inhibition balance is altered (e.g. after a stroke or loss of sensory input). We tested cortical map plasticity on the basis of sensory responses (local field potentials, LFPs) and expression of neuronal activity marker proteins within the barrel cortex of rats receiving either active or sham rTMS after selective unilateral deafferentation by whiskers plucking. Rats received daily rTMS [intermittent theta-burst (iTBS), active or sham] for 5 days before exploring an enriched environment. Our previous studies indicated a disinhibitory effect of iTBS on cortical activity. Therefore, we also expected disinhibitory effects if deafferentation causes depression of sensory responses. Deafferentation resulted in an acute general reduction of sensory responsiveness and enhanced expression of inhibitory activity markers (GAD67, parvalbumin) in the deafferented hemisphere. Active but not sham-iTBS-rTMS normalized these measures. The stronger caudal-to-frontal horizontal spread of activity across barrels was reduced after deafferentation but not restored after active iTBS, despite generally increased responses. Fitting the Ellen Kloosterboer studied Biochemistry at the Ruhr-University Bochum, where she completed with a Master's degree in 2011. In 2012, she joined the research team 'Experimental Cortical Plasticity' of Klaus Funke (Department of Neurophysiology, Medical Faculty, RUB), where she investigated the influence of transcranial magnetic stimulation on cortical plasticity in the rat and received her doctorate in 2016. Klaus Funke studied Biology at the Ruhr-University in Bochum, receiving a diploma (1983) and completing doctoral thesis work (1988) on the central somatosensory system of pigeons. As a postdoctoal student, he joined the group of Ulf Eysel (Department of Neurophysiology, Medical School, Ruhr-University Bochum) studying the state-dependent modulation of retinogeniculate signal transmission (habilitation in physiology 1996). Subsequently, he has built up a research team working on animal models of cortical plasticity and, currently, on the cellular mechanisms of transcranial magnetic stimulation. This is an open access article under the ter...