Lipooligosaccharides (LOS) are highly antigenic glycolipids produced by a number of Mycobacterium species, which include "M. canettii," a member of the M. tuberculosis complex, and the opportunistic pathogens M. marinum and M. kansasii. The various LOS share a core composed of trehalose esterified by at least 1 mole of polymethyl-branched fatty acid (PMB-FA) and differ from one another by their oligosaccharide extensions. In this study, we identified a cluster of genes, MSMEG_4727 through MSMEG_4741, likely involved in the synthesis of LOS in M. smegmatis. Disruption of MSMEG_4727 (the ortholog of pks5 of M. tuberculosis), which encodes a putative polyketide synthase, resulted in the concomitant abrogation of the production of both PMB-FA and LOS in the mutant strain. Complementation of the mutant with the wild-type gene fully restored the phenotype. We also showed that, in contrast to the case for "M. canettii" and M. marinum, LOS are located in deeper compartments of the cell envelope of M. smegmatis. The availability of two mycobacterial strains differing only in LOS production should help in defining the biological role(s) of this important glycolipid.Within the high-GϩC gram-positive Actinobacteria division, the genus Mycobacterium belongs to the suborder of Corynebacterineae, a taxon characterized by a multilayered cell envelope extremely rich in unusual lipids. M. tuberculosis is a well-adapted and very successful human pathogen, infecting one-third of the world's population (estimated up to 2 billion people) and killing a person every 10 seconds (15). In addition, nearly two-thirds of the 135 described species were reported as human or animal pathogens (37), an observation assumed to be related to the very unusual envelope of mycobacteria, one of the most impenetrable in the living word (23). This coat confers to mycobacteria a remarkable passive resistance to antibiotics, antiseptics, or disinfectants and to the bactericidal properties of phagocytic cells (11,24). Furthermore, various lipidic components of this envelope are known to modulate the host immune system and phagocytic cell functions (1, 47).The mycobacterial cell envelope is composed of two kinds of lipids: (i) the cell wall-bound mycolic acids, which are verylong-chain fatty acids that contribute in a large part to the cell impermeability (23), and (ii) the so-called free lipids, which originate from the plasma membrane, the outer mycomembrane, and the capsule (11) and are extractable with organic solvents. These include the ubiquitous trehalose dimycolate and phosphatidylinositol mannosides (PIM) (1, 11, 47) and the species-or type-specific lipids with a more restricted distribution, such as the sulfolipids (11), phenolglycolipids (12,21,31), and phthiocerol dimycocerosates (21, 31) of M. tuberculosis and the glycopeptidolipids (GPL) (1,12,14) and lipooligosaccharides (LOS) (12) of M. avium and M. smegmatis.LOS are highly antigenic glycoconjugates that are exposed at the cell surface of the mycobacterial species that produce them (3, 34), b...