By opening and closing the permeation pathway (gating) in response to cGMP binding, cyclic nucleotide-gated (CNG) channels serve key roles in the transduction of visual and olfactory signals. Compiling evidence suggests that the activation gate in CNG channels is not located at the intracellular end of pore, as it has been established for voltage-activated potassium (KV) channels. Here, we show that ion permeation in CNG channels is tightly regulated at the selectivity filter. By scanning the entire selectivity filter using small cysteine reagents, like cadmium and silver, we observed a state-dependent accessibility pattern consistent with gated access at the middle of the selectivity filter, likely at the corresponding position known to regulate structural changes in KcsA channels in response to low concentrations of permeant ions.cGMP Í ion channel Í signal transduction C yclic nucleotide-gated (CNG) channels sense variations in the intracellular concentration of cyclic nucleotides that occur in response to visual or olfactory stimuli, therefore playing essential roles in the transduction of visual and olfactory information (1, 2). In many ways, CNG channels are similar to voltage-activated potassium (K V ) channels. They coassemble as tetramers of homologous subunits (3-6), each containing six transmembrane segments (TM), a positively charged TM4 and a reentry P region between TM5 and TM6, suggesting that CNG channels belong to the same superfamily of voltage-activated cation channels (7). The main difference is that CNG channels are only weakly voltage-dependent. Instead, they open and close the pore in response to changes in the intracellular concentrations of cGMP or cAMP, a property conferred by the presence of a cyclic nucleotide binding domain at the C terminus of each subunit (8, 9).Our understanding of how CNG channels open and close their pore in response to cyclic nucleotide binding is much less refined than our understanding of how K V channels gate in response to voltage. A large body of evidence, using a variety of approaches, has established that K V channels open and close their permeation pathway at the intracellular end of the pore (10-17). Attempts to extend those ideas to CNG channels have encountered some resistance. For example, studies using intracellularly applied molecules that block the permeation pathway of CNG channels, such as divalent ions (18), tetracaine (19,20), or quaternary ammonium ions (21), have shown that blockade is not state-dependent, as if these molecules can access the pore in both open and closed channels, which is in stark contrast with the blockade properties observed in K V channels (10,11,14,(22)(23)(24). In addition, experiments examining the state dependence of cysteine modification by intracellular application of methanethiosulfonate (MTS) reagents have failed to show dramatic differences between open and closed states in the inner-vestibule region (21,25,26), results that are inconsistent with an intracellular gate in TM6, as shown in K V channels (12,15).Se...