Surface waters worldwide are often contaminated with treated sewage effluent containing pharmaceutical and personal-care products (PPCP) in the ng/liter to g/liter range. Their presence reflects the fact that despite variation in excretion rates and types of metabolites, some drugs exit the human body relatively unchanged and are subsequently not fully removed during sewage treatment. Concern is growing regarding potential environmental effects of PPCP pollution for a number of reasons: (i) many drugs interact with a biological target shared by humans, other animals, and even plants and microorganisms; (ii) most act at relatively low concentrations; (iii) pharmaceuticals need time to achieve the desired effect and, thus, are designed specifically to resist degradation in the body (15); (iv) pharmaceuticals are constantly added to aquatic ecosystems, and their rate of addition often exceeds transformation or degradation rates; and (v) chronic exposure has been linked to the development of antibiotic-resistant bacteria (7).Current ecological assessment approaches for PPCP monitoring (using conventional aquatic toxicity tests) are performed in isolation and out of the context of a larger and more relevant ecological structure (8). Biofilms, for both their basal role in aquatic food webs and their importance in fundamental processes such as biodegradation and biogeochemical cycling, are ideal candidates for monitoring the ecological effects of pharmaceutical pollution on aquatic environments. Other advantages of biofilms for such studies include their continual exposure to contaminants, abundance, ubiquity, and stationary state (21). Although the subinhibitory pollutant concentrations involved preclude the use of marker genes or species, since subtle and complex effects are expected, an approach quantifying the expression of a range of genes might be appropriate.Anonymous DNA microarrays are frequently used for transcriptomic studies of organisms whose genomes have not been sequenced (5,14,23,26,31,32). Using this approach, cDNA is hybridized to unsequenced DNA or cDNA fragments that are printed on a microarray, and only the probes that display significant responses to the treatment of interest are sequenced. Similarly, anonymous DNA microarrays could be an interesting alternative for the comparative metatranscriptomic analysis of environmental samples. The advantages of such an approach are 2-fold: first, there is no need for previous environmental genomic knowledge; second, a large number of samples can be examined without tedious metatranscriptomic sequencing each time a new sample is analyzed. Previously, anonymous microarrays for analyses of mixed microbial communities were used mainly at the genomic level to detect or differentiate particular species (6,(16)(17)(18)27). More recently, a 2,000-probe microarray made of 2.0-kb anonymous fragments was successfully used to fingerprint a simple sludge sample