The core protein of a small chondroitin/dermatan sulfate proteoglycan expressed by human fibroblasts and present in extracellular matrices in association with collagen has been cloned from a Xgtll fibroblast cDNA library. cDNA clones were isolated by use of antibodies specific for the intact proteoglycan and antibodies against a peptide synthesized on the basis of the amino-terminal sequence of the core protein. A 1.8-kilobase cDNA was found to code for a prepro core protein composed of a signal peptide, a propeptide, and a mature core protein of 329 amino acids. The amino-terminal amino acid sequence deduced from the cDNA sequence was identical to that previously obtained by protein sequencing. The core protein contains three Ser-Gly dipeptide sequences, of which one is substituted with glycosaminoglycan. A protein data base homology search established the core protein sequence is a unique sequence distinct from published amino acid sequences. RNA blot hybridizations, performed using the cloned cDNA as a probe, revealed two related transcripts of 1.6 and 1.9 kilobases in RNA from both human fibroblast and placental tissue. Hybridization of genomic DNA restriction fragments suggested that there is one gene for the core protein of this proteoglycan and possibly one other closely related gene. Availability of the cloned cDNA for the proteoglycan now makes it possible to apply methods of molecular biology to study the collagen-binding and cell attachment-inhibiting properties of this proteoglycan.Proteoglycans are abundant molecules in extracellular matrices, in basement membranes, and at cell surfaces (1, 2). They exist in many different forms, some of which are tissueor cell-type specific (1, 2). The structural relationships and functional properties of proteoglycans are poorly understood. This is mostly due to a lack of detailed structural information about the core proteins which primarily determine the specific properties of a proteoglycan.A small chondroitin/dermatan sulfate proteoglycan, or group of proteoglycans, is of particular interest due to its abundance and functional properties. This proteoglycan is the major sulfated product of fibroblasts and is abundant in the extracellular matrices of connective tissues (2). It binds to type I collagen, affecting fibril formation (3,4), and inhibits the cell attachment-promoting activity of collagen and fibronectin by binding to these molecules near their cell-binding site (5). At least the binding to collagen appears to be mediated by the core protein, since treatment of the proteoglycan with chondroitinase, which removes most of the glycosaminoglycan, does not eliminate the binding to collagen (ref. 4 and unpublished results).This proteoglycan has a core protein of Mr 38,000 and usually carries one glycosaminoglycan chain (2, 6, 7). It is not known whether the core protein is a single protein or whether it might consist of a family of closely related molecules. Recent work on bovine cartilage proteoglycans suggests that at least two core protein species...