2017
DOI: 10.1101/180786
|View full text |Cite
Preprint
|
Sign up to set email alerts
|

Gene markers for exon capture and phylogenomics in ray-finned fishes

Abstract: 11Gene capture coupled with the next generation sequencing has become one of the favorable

Help me understand this report
View published versions

Search citation statements

Order By: Relevance

Paper Sections

Select...
1
1
1
1

Citation Types

0
4
0

Year Published

2017
2017
2022
2022

Publication Types

Select...
5

Relationship

4
1

Authors

Journals

citations
Cited by 5 publications
(4 citation statements)
references
References 32 publications
0
4
0
Order By: Relevance
“…We have developed 4,434 single-copy nucleotide loci for ray-finned fishes, and tested them in 83 species (33 families and 11 orders), covering major clades of ray-finned fishes 36 . Those markers have few missing data in the taxa tested, showing promise for their deployment in phylogenetics and population genetic analyses.…”
Section: Resultsmentioning
confidence: 99%
“…We have developed 4,434 single-copy nucleotide loci for ray-finned fishes, and tested them in 83 species (33 families and 11 orders), covering major clades of ray-finned fishes 36 . Those markers have few missing data in the taxa tested, showing promise for their deployment in phylogenetics and population genetic analyses.…”
Section: Resultsmentioning
confidence: 99%
“…A suite of 4,434 target loci were developed for ray‐finned fishes by Jiang et al (). Sequences of the 4,434 loci of two clupeiform species, Denticeps clupeoides and Ilisha elongata , collected in our previous experiments were used in designing RNA baits.…”
Section: Methodsmentioning
confidence: 99%
“…Restriction site associated DNA sequencing (RAD-seq), genotyping by sequencing, or SNP arrays are common tools for collecting SNP data (Houston et al, 2020); however, the cost of these methods is prohibitive to low-budget projects. Target enrichment for multiple nuclear loci may be a good low-cost alternative, such as single-copy nuclear loci for ray-finned fishes (Jiang et al, 2019). Several countries have established national programs to support agriculture, beef, poultry, and pork genetic programs for those industries.…”
Section: New Technologies and Perspectivesmentioning
confidence: 99%