(1998) Neuron 21, 531-543). In the presence of saturating capsaicin, rat TRPV1 (rTRPV1) reaches full activation, with no further stimulation by protons. Human TRPV1 (hTRPV1), a species ortholog with high homology to rTRPV1, is potentiated by extracellular protons and magnesium, even at saturating capsaicin. We investigated the structural basis for protons and magnesium modulation of fully capsaicin-bound human receptors. By analysis of chimeric channels between hTRPV1 and rTRPV1, we found that transmembrane domain 1-4 (TM1-4) of TRPV1 determines whether protons can further open the fully capsaicin-bound receptors. Mutational analysis identified a titratable glutamate residue (Glu-536) in the linker between TM3 and TM4 critical for further stimulation of fully liganded hTRPV1. In contrast, hTRPV1 TM5-6 is required for magnesium augmentation of capsaicin efficacy. Our results demonstrate that capsaicin efficacy of hTRPV1 correlates with the extracellular ion milieu and unravel the relevant structural basis of modulation by protons and magnesium.The capsaicin receptor (transient receptor potential vanilloid 1 (TRPV1)), 2 a transduction channel gated by multiple noxious stimuli, plays a central role in signal integration in pain-sensing neurons (2, 3). Noxious heat (Ͼ42°C), acid, and capsaicin, a pungent natural product from chili peppers, all activate TRPV1 to elicit burning pain (1, 4). Functional synergism among modalities allows TRPV1 to summate different types of subthreshold stimuli and produce a robust response (1, 5, 6). The extent of TRPV1 activation by one or a combination of stimuli determines the intensity of evoked pain (7-12).Many mammalian TRPV1 agonists exhibit weak receptor activation, even if they may bind the receptor comparably to capsaicin (13,14). Acidic pH potentiates responses evoked by a low concentration of capsaicin in human and rat TRPV1 alike (1, 15). In contrast, extracellular acidification can enhance only the human receptor currents when capsaicin is applied at a concentration higher than 10 M (15). Thus, capsaicin functions as a partial agonist for hTRPV1 but a full agonist for the rat receptor. An elevation of temperature or local acidity can in principle augment the efficacies of partial agonists, transforming them from weakly or non-pain-producing ligands into noxious chemicals (16,17). Thus, pain sensation arising from TRPV1 activation by chemical agonists in humans could conceivably be different from that in rodents, the model species frequently used in biomedical research.Besides its involvement in pain sensation, TRPV1 displays a low level of activity at normal body temperature (18). Constitutive activity of TRPV1 is essential for regulation of body temperature, evidenced by high fever as a perilous side effect of many TRPV1 blockers during clinical trials for their efficacy in management or prophylaxis of pain (19). Modulators of TRPV1 basal activity and their sites of action are largely unknown; far less known is the variation of basal activities among species in which TRPV1...