“…V was selected to encompass all the waters below 10‐m depth in the main stem of Chesapeake Bay, ranging between the Rappahannock River in the south and the Patapsco River in the north (Figure d). The O 2 budget over the control volume is derived from the full conservation equation given by where x , y , and z stand for the longitudinal (along‐channel, namely, the major axis of the depth‐averaged tidal flows), lateral (cross‐channel), and vertical directions, respectively (see Xie et al, for a more detailed definition); u , v , and w represent the velocity components in these directions; K H and K V are the horizontal and vertical diffusivities, respectively; WCR is the water column O 2 uptake and includes algal respiration, organic matter oxidation, nitrification, and oxidation of sulfide/methane; SOD is the sediment oxygen demand; F air − sea is O 2 flux across the air‐sea interface; and P phyto is O 2 produced by phytoplankton in the euphotic layer.…”