Genetic and Environmental Variation in Continuous Phenotypes in the ABCD Study®

Abstract

Twin studies yield valuable insights into the sources of variation, covariation and causation in human traits. The ABCD Study® (abcdstudy.org) was designed to take advantage of four universities known for their twin research, neuroimaging, population-based sampling, and expertise in genetic epidemiology so that representative twin studies could be performed. In this paper we use the twin data to: (i) provide initial estimates of heritability for the wide range of phenotypes assessed in the ABCD Study using a consistent direct variance estimation approach, assuring that both data and methodology are sound; and (ii) provide an online resource for researchers that can serve as a reference point for future behavior genetic studies of this publicly available dataset. Data were analyzed from 772 pairs of twins aged 9–10 years at study inception, with zygosity determined using genotypic data, recruited and assessed at four twin hub sites. The online tool provides twin correlations and both standardized and unstandardized estimates of additive genetic, and environmental variation for 14,500 continuously distributed phenotypic features, including: structural and functional neuroimaging, neurocognition, personality, psychopathology, substance use propensity, physical, and environmental trait variables. The estimates were obtained using an unconstrained variance approach, so they can be incorporated directly into meta-analyses without upwardly biasing aggregate estimates. The results indicated broad consistency with prior literature where available and provided novel estimates for phenotypes without prior twin studies or those assessed at different ages. Effects of site, self-identified race/ethnicity, age and sex were statistically controlled. Results from genetic modeling of all 53,172 continuous variables, including 38,672 functional MRI variables, will be accessible via the user-friendly open-access web interface we have established, and will be updated as new data are released from the ABCD Study. This paper provides an overview of the initial results from the twin study embedded within the ABCD Study, an introduction to the primary research domains in the ABCD study and twin methodology, and an evaluation of the initial findings with a focus on data quality and suitability for future behavior genetic studies using the ABCD dataset. The broad introductory material is provided in recognition of the multidisciplinary appeal of the ABCD Study. While this paper focuses on univariate analyses, we emphasize the opportunities for multivariate, developmental and causal analyses, as well as those evaluating heterogeneity by key moderators such as sex, demographic factors and genetic background.

Heritability estimation of cognitive phenotypes in the ABCD Study®using mixed models

“…Interestingly, the RAVLT had near-zero estimates for all random effects variances in all models, indicating that this task may be exceptionally unreliable in this sample, or perhaps particularly prone to variance in measurement. For further information regarding the heritability of 14,500 phenotypes in the ABCD Study ® baseline sample, see recent work by Maes and colleagues (2023).…”

Common genetic factors for uncontrolled eating mechanisms

“…(2) the common environment component is free to estimate negative variance, which could indicate substantial dominant genetic effects that outweigh any common environmental effects that are present (for a thorough explanation of this approach see Maes et al, 2023).…”

Heritability Estimation of Cognitive Phenotypes in the ABCD Study® Using Mixed Models

“…Interestingly, the RAVLT had near-zero estimates for all random effects variances in all models, indicating that this task may be exceptionally unreliable in this sample, or perhaps particularly prone to variance in measurement. For further information regarding the heritability of 14,500 phenotypes in the ABCD Study ® baseline sample, see recent work by Maes and colleagues ( 2023 ).…”