“…Based on t-SNE analysis, unbiased clustering of the cells parallelly identified four main clusters according to their gene profiles and canonical markers ( Figure 2 b). Particularly, these cell clusters were: (C0) the homeostatic chondrocytes (HomCs) highly expressing COL2A1 , 27 COL3A1 , 28 HAPLN1 29 and PRG4 ; 30 (C1) the stressed chondrocytes (StrCs) preferentially expressing CDKN1A , 31 DNAJB6 , 32 SLC3A2 33 and HSPB1 ; 34 (C2) the regulatory chondrocytes (RegCs) specifically expressing CHI3L1 , 35 CHI3L2 , 35 NBL1 36 and TNC ; 37 and (C3) the degenerative chondrocytes (DegCs) with high expression of COL10A1 , 27 MT1X , 38 IGFB7 , 39 and RAMP1 40 ( Figure 2 c, d). We noticed that, in damaged cartilage, the frequency of HomCs was declined, while StrCs and RegCs were increased ( Figure 2 e), indicating loss of cartilage homeostasis and increased cellular stress in the damaged area than the intact area.…”