The mixed leukocyte culture (MLC) t test has been used as a measure of histocompatibility and as a model of the recognition phase of the homograft reaction. Studies in man (I), mouse (2), and rat (3) have suggested that activation or stimulation in MLC is dependent on differences at the major histocompatibility complex (MHC) although exceptions to this rule have been found (4). In the mouse the MHC includes two serologically defined (SD) loci, H-2K and H-2D, immune response (Ir) loci (5, 6), loci governing susceptibility or resistance to tumor viruses (7), and the Ss-Slp loci (8).It was naturally assumed that since MLC activation was dependent on MHC differences, SD antigen differences were responsible for stimulation. Unusual and aberrant cases in human studies (9-12) suggested, however, that in addition to the SD loci, there may be MHC differences which are difficult to detect serologically using the usual methods of immunization and testing, but which can cause a lymphocyte proliferative response. We will refer to such differences as lymphocyte-defined (LD) differences (13).We will present data in this paper which we have obtained in mouse MLC studies. We have for the most part made use of congenic strains of animals carrying recombinant M H C chromosomes (strains that are genetically identical except for the genes of the MHC). This allows us to test two animals differing for only some segment of the MHC. In a few cases we have studied animals differing for the M H C and for loci segregating independently of the M H C ; these will be discussed in detail. Our results indicate that the strongest MLC activation is associated with Ir