Retinoic acid (RA) is a critical regulator of gene expression during embryonic development and in the maintenance of adult epithelial tissues. Genetic polymorphisms of CYP26A1 could cause interindividual variation in the metabolism of retinoic acid, thus altering signaling during embryonic development. A total of 13 single nucleotide polymorphisms (SNPs) were identified in CYP26A1 in 92 racially diverse individuals (24 Caucasians, 24 African-Americans, 24 Asians and 20 individuals of unknown racial origin). Three of the 13 SNPS produced coding changes: R173S, F186L and C358R. These alleles were termed CYP26A1*2, CYP26A1*3, and CYP26A1*4, respectively, by the Human Cytochrome P450 (CYP) Allele Nomenclature Committee at http://www.cypalleles.ki.se/. cDNA constructs for wild-type and mutant alleles of CYP26A1 were constructed in a pcDNA3.1 expression vector containing a FLAG tag at the C-terminal end, which was used to identify and quantitate the CYP26A1 allelic proteins when expressed in COS-1 cells. Wild type CYP26A1 protein metabolized all-trans-retinoic acid (at-RA) to 4-oxo-RA, 4-OH-RA and 18-OH-RA as well as watersoluble metabolites. CYP26A1.3 (F186L) and CYP26A1.4 (C358R) allelic proteins exhibited significantly lower metabolism (40-80%) of at-RA than wild-type CYP26A1.1 protein. This study identifies two CYP26A1 coding alleles, CYP26A1*3 and CYP26A1*4, which are predicted to be defective in retinoic acid metabolism based on the metabolism of at-RA by the recombinant proteins. This is the first study to identify coding alleles of CYP26A1. The in vitro characterization of the recombinant allelic proteins suggests the need for future clinical studies of genotype/phenotype relationships of CYP26A1 in embryonic development.