Drosophila melanogaster females undergo a variety of post-mating changes that 1 influence their activity, feeding behavior, metabolism, egg production and gene 2 expression. These changes are induced either by mating itself or by sperm or seminal 3 fluid proteins. In addition, studies have shown that axenic females-those lacking a 4 microbiome-have altered fecundity compared to females with a microbiome, and that 5 the microbiome of the female's mate can influence reproductive success. However, the 6 extent to which post-mating changes in transcript abundance are affected by 7 microbiome state is not well-characterized. Here we investigated fecundity and the 8 post-mating transcript abundance profile of axenic or control females after mating with 9 either axenic or control males. We observed interactions between the female's 10 microbiome and her mating status: transcripts of genes involved in reproduction and 11 genes with neuronal functions were differentially abundant depending on the females' 12 microbiome status, but only in mated females. In addition, immunity genes showed 13 varied responses to either the microbiome, mating, or a combination of those two 14 factors. We further observed that the male's microbiome status influences the fecundity 15 of both control and axenic females, while only influencing the transcriptional profile of 16 axenic females. Our results indicate that the microbiome plays a vital role in the 17 post-mating switch of the female's transcriptome. 18 1 Introduction 19 Reproductive success is determined by the cumulative effects of behavioral and 20 physiological changes that a female undergoes after mating. In Drosophila, these 21 post-mating responses include sperm storage, increased oocyte production and 22 ovulation, a decrease in sleep and the female's propensity to remate, alterations to the 23 female's immune system, and changes in feeding frequency, gut morphology and 24 physiology (reviewed in [1]). These phenotypic changes are accompanied by extensive 25 transcriptome changes across several female tissues [2-11]. These transcriptome changes 26 typically reach their highest magnitude at around six hours after mating [5, 10], and 27often include genes that encode proteolytic/metabolic enzymes and immune response 28 genes [5,[9][10][11]. Furthermore, these female post-mating responses are influenced by an 29 1/28 interplay between the genotypes of the female and her mate [12][13][14][15][16], and are induced in 30 part by male ejaculate components that are transferred to the female during 31 mating [1, 4-6, 17, 18]. The post-mating changes in metabolism and food uptake are 32 thought to be required to meet the high energetic demands of oocyte production [19,20], 33 and can be potentially be influenced by transient factors such as the host microbiome.
34In recent years, Drosophila melanogaster has emerged as a valuable model to study 35 fundamental principles of host-microbiome interactions, owing to the availability of 36 genetic resources and a well-characterized and easily-m...