Genetic Monitoring of the Captive Population of the Critically Endangered Brazilian Merganser (Mergus octosetaceus)

Abstract

The Brazilian Merganser (Mergus octosetaceus) is one of the rarest birds in South America, and it is a critically endangered Anatidae species with an estimated population of less than 250 adult individuals in the Brazilian Cerrado. A captive population was established a few years ago at Zooparque Itatiba (São Paulo state) where 46 individuals were kept, and the founding population (progenitors derived from nature) was composed of 19 of the ex situ birds, derived from the four remaining localities with wild populations in Brazil. To characterize the genetic diversity and the genealogical relationships of the captive population, it is essential to conduct appropriate ex situ management and to assist future reintroduction projects. Thus, we have identified 425 SNPs by massively parallel sequencing of ddRAD libraries that allowed us to genotype individuals of the captive population. We observed a close relatedness between 70% of the captive population and founding individuals of Jalapão and Alto Paranaiba localities, indicating the need for supplementation with individuals from other areas of Canastra and Veadeiros. Even though many captives present a high level of inbreeding, we have identified some individuals with a high genetic value (less inbred) that can be selected for the breeding program to generate individuals for a future pilot reintroduction project.