ABSTRAKTujuan penelitian ini adalah mempelajari keragaman genetik populasi domba di Indonesia menggunakan penciri DNA mikrosatelit. Sebanyak 18 lokus DNA mikrosatelit digunakan untuk menentukan genotipe populasi domba Indonesia. Sampel darah domba yang digunakan sebanyak 200 ekor berasal dari populasi domba garut tipe tangkas, domba garut tipe daging, domba purbalingga, domba batur dan domba jember diektraksi DNA total dengan menggunakan metode salting out. Data lokus DNA mikrosatelit dianalisis menggunakan program POPGENE 3.2. Hasil penelitian menunjukkan bahwa diperoleh sebanyak 180 alel dari 17 lokus DNA mikrosatelit, sedangkan rataan jumlah alel adalah 10 alel (6 sampai 18 alel) dari lima populasi domba Indonesia (domba garut tipe tangkas, domba garut tipe daging, domba purbalingga, domba batur dan domba jember). Nilai heterosigositas observasi (Ho) dan heterosigostas harapan (He) diperoleh masing-masing 0,5749 dan 0,6896, sedangkan nilai genetik diferensiasi untuk inbreeding antar populasi (FIS), dalam populasi (FIT) dan rataan diferensiasi genetik (FST) masing-masing 0,1006; 0,1647 dan 0,0712. Jarak genetik dan pohon genetik menunjukkan bahwa populasi domba Indonesia berbeda antara populasi domba garut tipe tangkas, domba garut tipe daging, domba purbalingga, domba batur dan domba jember. Berdasarkan hasil penelitian dapat disimpulkan bahwa diperlukan strategi program pemuliaan, pelestarian dan pemanfaatan secara berkelanjutan pada setiap populasi domba di Indonesia.
Kata-kata kunci: domba Indonesia, penciri DNA mikrosatelit, keragaman genetik
ABSTRACTThe purpose of this research was to study genetic diversity in Indonesian sheep population using microsatellite markers. A total of 18 microsatellite loci have been used for genotyping Indonesian sheep. Total sheep blood 200 samples were extracted from garut sheep of fighting and meat types, purbalingga sheep, batur sheep and jember sheep populations by using a salting out method. Microsatellite loci data were analyzed using POPGENE 3.2 software. Based on this study obtained 180 alleles from 17 microsatellite loci, while average number of alleles was 6.10 alleles (6 to 18 alleles) from five Indonesian sheep populations (garut sheep of fighting type, garut sheep of meat type, purbalingga sheep, batur sheep and jember sheep population). The average of observed heterozygosity (Ho) and expected heterozygosity (He) values were 0.5749 and 0.6896, respectively, while the genetic differentiation for inbreeding among population (FIS), within population (FIT) and average genetic differentiation (FST) were 0.1006, 0.1647 and 0.0712, respectively. Genetic distance and genetic tree showed that Indonesian sheep population was distinct from garut sheep of fighting and meat types, purbalingga sheep, batur sheep and jember sheep population. Based on this results were needed a strategy for conservation and breeding programs in each Indonesian sheep population.