“…The Inter Simple Sequence Repeats (ISSR) are DNA-based marker techniques that has been successfully used to determine genetic diversity and relationships Musa germplasms Kaemmer et al, (1992), Howell et al, (1994, Bhat and Jarret (1995), Crouch et al, (2000), Jain et al, (2007), Racharak and Eidathong (2007), Ruangsuttapha et al, (2007), Agoreyo et al,(2008), Brown et al,(2009) and for genome identification, Howell et al, (1994), Pillay et al, (2000), analysis of Musa breeding populations, Crouch et al, (1999), detection of somaclonal variants, Grajal-Martin et al, (1998) and genetic stability, Harirah and Khalid (2006), Ray et al, (2006), Lakshmanan et al, (2007) and Venkatachalam et al,(2007). Using these techniques an unlimited number of polymorphic bands can be produced with relative ease from minute amounts of genomic DNA, Welsh and McClelland(1990), Godwin et al, (1997), Reddy et al, (2002) allowing simultaneous screening of a large number of accessions.…”