Spike shape, an important factor for wheat grain yield, is mainly de ned by spike length (SPL), spikelet number (SPN) and compactness. ZM1160, a mutant obtained from ethyl methane sulfonate (EMS) treatment of hexaploid wheat variety Zhoumai32, was used to identify and clone the candidate gene conditioned the spike shape. Genetic analysis of an F 2 population derived from a cross of ZM1160 and Bainong207 suggested that the compact spike shape in ZM1160 was controlled by a single recessive gene, and therefore the mutated gene was designated as Tasp1. With polymorphic markers identi ed through bulked segregant analysis (BSA), the gene was mapped to a 2.65 cM interval anked by markers YZU0852 and MIS46239 on chromosome 7D, corresponding to a 0.42 Mb physical interval of Chinese spring (CS) reference sequences (RefSeq v1.0). To ne map TaSP1, 15 and 7 recombinants were respectively screened from 1599 and 1903 F 3 plants derived from the heterozygous F 2 plants. Finally, TaSP1 was delimited to a 21.9 Kb (4,870,562 to 4,892,493 bp) Xmis48123-Xmis48104 interval. Only one high-con dence gene TraesCS7D02G010200 was annotated in this region, which encodes an unknown protein with a putative vWA domain. The quantitative reverse transcription PCR (qRT-PCR) analysis showed that TraesCS7D02G010200 was mainly expressed in the spike. Haplotype analysis of 655 wheat cultivars using the candidate gene-speci c marker G010200P2 identi ed a superior haplotype TaSP1b with longer spike. TaSP1 is bene cial to the improvement of wheat spike shape.
Key messageA candidate gene TaSP1 related to spike shape was cloned, and the gene-speci c marker was developed to e ciently track the superior haplotype in common wheat.